| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2012-12-06 | Continued work on basic statistics table in show_trait | Zachary Sloan | |
| Continued work towards getting show_trait to work with phenotype traits | |||
| 2012-12-06 | Added minimum/maximum to basic statistics table | Zachary Sloan | |
| Continued bug-shooting related to getting show_trait running with phenotype traits | |||
| 2012-12-06 | Got show_trait running again for MrnaAssay traits | Zachary Sloan | |
| 2012-12-06 | Made many small changes to show_trait/data_set/search_results/trait to | Zachary Sloan | |
| remove use of the formData object and cursor | |||
| 2012-12-05 | Renamed webqtlTrait.py to trait.py | Zachary Sloan | |
| Renamed webqtlTrait class to GeneralTrait Began process of removing fd from show_trait.py Created DatasetGroup object in data_set.py (this may end up becoming its own file later if it becomes big enough) | |||
| 2012-12-05 | Continued to make changes related to getting rid of cursor/db_conn | Zachary Sloan | |
| and using simple sqlalchemy Got Pheno/MrnaAssay dataset searches working again | |||
| 2012-12-04 | Changed parser to allow quotes (i.e. name="rw williams") | Zachary Sloan | |
| Renamed webqtlTrait to GeneralTrait and began rewriting parts Changed database code in many places to use simple sqlalchemy | |||
| 2012-12-04 | Began changing references to cursor/db_conn to use sqlalchemy | Zachary Sloan | |
| Wrote function for phenotype author searches | |||
| 2012-11-30 | Added example of escaping strings now that trasitioning to simple SQLAlchemy | Zachary Sloan | |
| 2012-11-30 | Started switching to using basic sqlalchemy to handle db connection/queries | Zachary Sloan | |
| Began fixing bugs related to this fix, still in progress | |||
| 2012-11-30 | Finished pValue search | Zachary Sloan | |
| Got headers working in search page | |||
| 2012-11-30 | Got searches working for RANGE and MEAN commands | Zachary Sloan | |
| Created a file where renamed variables will be listed for future reference | |||
| 2012-11-29 | Changed a number of variables (riset to group, db to dataset) | Zachary Sloan | |
| Put most of the code for cisLRS and transLRS searches into the class CisTransLrsSearch (might change this name to something else later) Simplified escape code for searches in do_search.py Got search_results working again after some changes | |||
| 2012-11-29 | Got LRS searches working with 5 parameters | Zachary Sloan | |
| 2012-11-28 | Got cisLRS search working (in web service) for searches with > or < (ex. LRS>99) | Zachary Sloan | |
| search_term is always a list now ([99] in the example LRS>99) | |||
| 2012-11-28 | Changed parser to split by ">=" and "<=" | Zachary Sloan | |
| 2012-11-28 | Changed parser.py to deal with the wild card character (*) and to split by | Zachary Sloan | |
| ">" and "<" in addition to "=" and ":" | |||
| 2012-11-28 | Made some small changes to get code working for genotype searches | Zachary Sloan | |
| 2012-11-27 | Created subclass for each main data set type and moved the code | Zachary Sloan | |
| for getting trait info that was in search_results.py into its respective class Renamed webqtlDataset to DataSet/create_dataset in webqtlTrait.py, webqtlDatabaseFunction.py, and CorrelationPage.py Got search page running again for mRNA assay data sets with these changes | |||
| 2012-11-27 | Renamed webqtlDataSet.py to data_set.py | Zachary Sloan | |
| Renamed the class webqtlDataset to DataSet Finished cisLRS and transLRS search types in d_search.py Fixed parent/f1 issue in show_trait.py | |||
| 2012-11-21 | Changed parser to allow for bother square brackets and parentheses | Zachary Sloan | |
| Changed show_trait.coffee to get the stats table working again Still need to get stats table to work with changed values | |||
| 2012-11-21 | Trimmed a large amount of code from search_results.py | Zachary Sloan | |
| Removed everything related to drawing html; finished code for getting info for Phenotype and Genotype result tables Did some more with CisLRS and TransLRS searches Put something in parser about using square brackets as well as parentheses Edited template for other table types (Geno and Pheno) | |||
| 2012-11-16 | Made small change to parser to have it detect square brackets '[' along with | Zachary Sloan | |
| round ones '('; need to ask Sam about rewriting the regular expression stuff Trimmed a lot of code from search_results.py | |||
| 2012-11-09 | Did some work with adding code for LRS-related searches | Zachary Sloan | |
| 2012-11-02 | Created search objects for GeneRIF and GeneWiki searches | Zachary Sloan | |
| Got search results to display Refactored the template for show_trait page | |||
| 2012-11-01 | Changed the if/elif statements for the different dataset types to | Zachary Sloan | |
| use a dictionary instead | |||
| 2012-11-01 | Began integrating do_search.py's DoSearch object into search_results.py, | Zachary Sloan | |
| with simple searches returning correct results Still need to make results display in the table Sam also did some work with the bootstrap styling | |||
| 2012-10-31 | Did work with writing the search page query functions for some ProbeSet and ↵ | Zachary Sloan | |
| Phenotype searches | |||
| 2012-10-30 | Worked on search_result.py code related to adding clause item to queries | Zachary Sloan | |
| Continued work on redesigning the trait data page design | |||
| 2012-10-30 | Did some work converting show_trait.html to using bootstrap for styling | Zachary Sloan | |
| 2012-10-26 | Changed search page appearance using bootstrap | Zachary Sloan | |
| Headers/information displays correctly for single mRNA expression trait searches | |||
| 2012-10-26 | Put footer/head into base.html; was previously just in index_page.html | Zachary Sloan | |
| 2012-10-26 | Got search page working for mice with a single gene search | Zachary Sloan | |
| 2012-10-25 | Worked on search page code; got to the part that actually does the search | Zachary Sloan | |
| Renamed RISet and cross to "group" throughout webqtlDataset.py and search_results.py | |||
| 2012-10-25 | Created header and set defaults for the search dropdown options | Zachary Sloan | |
| 2012-10-25 | Got the Make Default option working on the home page | Zachary Sloan | |
| 2012-10-25 | Looks like the code that imports logging was changed in runserver.py | Zachary Sloan | |
| Small change to the code printing out fd in search_results.py | |||
| 2012-10-24 | Now builds json datastructure for menus correctly | Zachary Sloan | |
| 2012-10-23 | Worked on the "Make Default" cookie code | Zachary Sloan | |
| 2012-10-23 | Finished coffeescript that handles the home page dataset selection dropdowns | Zachary Sloan | |
| 2012-10-19 | Finished gen_select_dataset.py which generates the json file that defines the | Zachary Sloan | |
| data structure used for the index page select dropdowns | |||
| 2012-10-19 | Reindented genSelectDatasetJS as gen_select_dataset | Zachary Sloan | |
| 2012-10-18 | Tried to make sense of existing code in select_dataset_menu.js/coffee, ↵ | Zachary Sloan | |
| decided to make data structure reasonable and rewrite coffeescript | |||
| 2012-10-18 | Fixed spacing on coffeescript file | Zachary Sloan | |
| 2012-10-18 | small changes | Zachary Sloan | |
| 2012-10-18 | Converted selectDatasetMenu.js code to coffeescript as ↵ | Zachary Sloan | |
| dataset_select_menu.coffee Copied the menu variables from selectDatasetMenu.js as dataset_select_items.js | |||
| 2012-10-17 | Fixed bug in an SQL query, changed search field id from "ORkeyword" to ↵ | Zachary Sloan | |
| "search_terms" | |||
| 2012-10-12 | New home page beginning to look good | Zachary Sloan | |
| 2012-10-12 | Continued work on new_index_page | Zachary Sloan | |
| 2012-10-12 | Changed export code to use csv module | Zachary Sloan | |
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| GeneNetwork (2nd generation) |
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