| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2018-04-09 | Fixed issue that caused and error for certain types of mapping due to ↵ | zsloan | |
| variable not being initialized Removed a bunch of unused statistical functions from Plot.py and webqtlUtil.py. I figure that if we ever need them again, there's probably some third party library that includes them. Also removed unused file AJAX_table.py and other unused code from several other files | |||
| 2018-04-09 | Removed unused code from get_select_dataset.py and get_group_samplelists.py ↵ | zsloan | |
| scripts | |||
| 2018-04-09 | Removed unused code from convert_geno_to_bimbam.py and corestats.py | zsloan | |
| 2018-04-09 | Removed the basicStatistics directory/contents because nothing there was ↵ | zsloan | |
| being used except corestats, which I moved to utility Removed box plot code from Plot.py since we no longer use it either | |||
| 2018-04-09 | Removed unused code from webqtlFormData.py | zsloan | |
| 2018-04-09 | Removed some unused code in webqtlConfig; some might need to be added back ↵ | zsloan | |
| in later when other third party links are implemented on the trait/collection pages | |||
| 2018-04-06 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan | |
| 2018-04-06 | Mapping figure output now gives more accurate information | zsloan | |
| Committing partway through removing a bunch of unused code/files just in case something necessary gets removed | |||
| 2018-04-06 | Removing use ValidationPlugin. See ↵ | Pjotr Prins | |
| https://github.com/genenetwork/genenetwork2/issues/310 | |||
| 2018-04-06 | See #308. | Pjotr Prins | |
| Cytoscape and related is now loaded from Guix. Use the latest GN2_PROFILE. | |||
| 2018-04-05 | Removed cytoscape - it is in Guix | Pjotr Prins | |
| 2018-04-04 | Changed bar chart y axis range to avoid situation where all variation is ↵ | zsloan | |
| clustered at the top or bottom | |||
| 2018-04-04 | Merge pull request #303 from pjotrp/testing | zsloan | |
| Minor edits and document on ES | |||
| 2018-04-04 | Authentication: comments added | Pjotr Prins | |
| 2018-04-04 | ES: doc | Pjotr Prins | |
| 2018-04-04 | Switched to plotly probability plot | zsloan | |
| Removed a variety of scripts that weren't being used on the trait page | |||
| 2018-04-02 | Fixed link for staging server | zsloan | |
| 2018-04-02 | Fixed error that caused server to not start with new user code | zsloan | |
| 2018-04-02 | Merge pull request #301 from pjotrp/testing-rm-bloat | zsloan | |
| Testing rm bloat (jqplot and ckeditor) | |||
| 2018-04-02 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan | |
| 2018-04-02 | Just added link to staging branch to header bar | zsloan | |
| 2018-04-02 | Config files are store in https://github.com/genenetwork/gn-deploy-servers repo | Pjotr Prins | |
| 2018-04-02 | Remove file | Pjotr Prins | |
| 2018-04-02 | User manager no longer uses SQL | Pjotr Prins | |
| 2018-04-02 | js: rm ckeditor - need to replace | Pjotr Prins | |
| 2018-04-02 | js: removed jqplot | Pjotr Prins | |
| 2018-04-02 | user_session add output | Pjotr Prins | |
| 2018-03-30 | Collections: use logging instead of print (@zsloan) | Pjotr Prins | |
| 2018-03-30 | Fixes related to E-mail forgotten password | Pjotr Prins | |
| 2018-03-30 | Fixes related to E-mail forgotten password | Pjotr Prins | |
| 2018-03-30 | Fixes forgotten password error, see #257 | Pjotr Prins | |
| 2018-03-29 | Can now add markers to collection from mapping results page | zsloan | |
| 2018-03-29 | Resolved conflict in views.py | zsloan | |
| 2018-03-29 | Fixed box plots and got them to update with changed sample data | zsloan | |
| Removed fast correlation option because it doesn't work well with gunicorn Changed the type of logger from error to debug when logging which page is being visited in views.py | |||
| 2018-03-29 | Fixed gsearch blowout https://github.com/genenetwork/genenetwork2/issues/295 | Pjotr Prins | |
| 2018-03-29 | Type checking in its own file | Pjotr Prins | |
| 2018-03-29 | Search: improved regex and some debug info | Pjotr Prins | |
| 2018-03-29 | Disable caching of search errors | Pjotr Prins | |
| 2018-03-29 | Checking search error terms with regex | Pjotr Prins | |
| 2018-03-29 | Illegal search term corrected treatment and no longer shows as error in logs | Pjotr Prins | |
| 2018-03-26 | Remove flask_security module - not used | Pjotr Prins | |
| 2018-03-26 | Use logger.info instead of logger.debug, fixes ↵ | Pjotr Prins | |
| https://github.com/genenetwork/genenetwork2/issues/296 | |||
| 2018-03-26 | Skip automatic use of EXPLAIN_TEMPLATE_LOADING. | Pjotr Prins | |
| 2018-03-26 | Refactor startup config for gunicorn and werkzeug | Pjotr Prins | |
| 2018-03-26 | Fix | Pjotr Prins | |
| 2018-03-26 | Authentication: some mods around defaults | Pjotr Prins | |
| 2018-03-26 | - Disabled PYTHONPATH injection - fix Guix instead, see ↵ | Pjotr Prins | |
| https://github.com/pjotrp/genenetwork2/commit/63a5c8a42ad02e9126bb207465ff5eca98f6515d - Renamed WQFLASK_SETTINGS to GN2_SETTINGS | |||
| 2018-03-26 | Check that key exists before using it | Muriithi Frederick Muriuki | |
| * Ensure the key exists in the json object/dictionary, before trying to use it to retrieve a value. | |||
| 2018-03-26 | Provide connections to elasticsearch | Muriithi Frederick Muriuki | |
| * Provide connections to elasticsearch at various points in the code. These oversight was caught while running tests. | |||
| 2018-03-26 | Fix assumption of existing collection | Muriithi Frederick Muriuki | |
| * When logging in, if a user selects "Import existing collections", the system would throw an exception, since Redis would return a NoneType, which would then be accessed by json.loads(), which doesn't seem to know how to process that. This fixes that, by providing a string representing an empty json array ("[]"), in place of the NoneType. | |||
 |
index : genenetwork2 | |
| GeneNetwork (2nd generation) |
| aboutsummaryrefslogtreecommitdiff |