| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2013-08-07 | Fixed things with the dataset dropdowns and mRNA datasets | Zachary Sloan | |
| Improved the templates for a couple pages related to changing user password, etc | |||
| 2013-08-02 | Fixed a bug related to groups with genofiles (not sure if it makes sense | Zachary Sloan | |
| for them not to have genofiles yet) | |||
| 2013-07-30 | Just added some print statements to debug an issue with LMM code | Zachary Sloan | |
| Also added some to notes | |||
| 2013-07-23 | Fixed a couple issues with he quick_search_table.py script | Zachary Sloan | |
| Added notes on using percona to optimise mysql to gn_installation_notes.txt Started moving "get_trait_data" to DataSet since it is the same regardless of the particular DataSet subclass (PhenotypeDataSet, MrnaAssayDataSet, etc) | |||
| 2013-07-19 | Finished integrating code that reads sample list from geno files | Zachary Sloan | |
| withouot using reaper and caches results so it doesn't need to read the file every single time someone loads a page | |||
| 2013-07-19 | Created file gen_group_samplelists that iterates through all genofiles | Zachary Sloan | |
| and builds each groups' samplelist | |||
| 2013-07-18 | Added Amelie's rat data genotypes | Zachary Sloan | |
| Got human mapping mostly working Fixed dataset dropdown menus | |||
| 2013-07-18 | Merge branch 'master' of https://github.com/zsloan/genenetwork | Zachary Sloan | |
| Conflicts: wqflask/base/webqtlConfigLocal.py wqflask/maintenance/gen_select_dataset.py wqflask/wqflask/static/new/javascript/dataset_menu_structure.json | |||
| 2013-07-18 | Added to installation notes | Zachary Sloan | |
| Removed webqtlConfigLocal file containing passwords Updated main page dropdown menus (dataset_menu_structure.json) | |||
| 2013-07-17 | Fixed gen_select_dataset.py | Zachary Sloan | |
| Appended redis installation info to notes | |||
| 2013-07-16 | Merge branch 'master' of https://github.com/zsloan/genenetwork | Zachary Sloan | |
| Conflicts: misc/gn_installation_notes.txt | |||
| 2013-07-16 | Wrote code that can get a dataset's type for every single GN | Zachary Sloan | |
| dataset; previously we could not view traits in datasets that were not in the DBType table in the database | |||
| 2013-07-10 | Updated gn_installation_notes | Zachary Sloan | |
| 2013-07-09 | Committing installation notes before editing them more | Zachary Sloan | |
| 2013-07-03 | Updated notes and created requirements.txt file | Zachary Sloan | |
| 2013-07-03 | Made the table in the group manager sortable, etc | Zachary Sloan | |
| 2013-06-27 | Created a group manager page where user administrators can create | Zachary Sloan | |
| groups of datasets to give/add read privileges to | |||
| 2013-06-26 | Merge /home/sam/gene | Zachary Sloan | |
| 2013-06-26 | More signin changes | Sam | |
| 2013-06-26 | Moved code creating DataSets object to a function in dataset.py | Zachary Sloan | |
| Added caching to creating DataSets object | |||
| 2013-06-26 | Got code that creates DataSets object running | Zachary Sloan | |
| Fixed one genofile that had extra quotation marks in the comments that caused an error Defaults mb_graph_interval to 1 for species without chromosome lengths in megabases | |||
| 2013-06-25 | Added DataSets class to dataset.py that will be used to create list of | Zachary Sloan | |
| confidential datasets | |||
| 2013-06-21 | Added a thank you for siging in message | Sam | |
| Fixed issues where homepage was reloaded in modal after siging in | |||
| 2013-06-21 | Merge /home/zas1024/gene | Sam | |
| 2013-06-21 | Working on getting logins working again | Sam | |
| 2013-06-21 | Fixed bug where cursor was still being used in query | Zachary Sloan | |
| 2013-06-20 | Merge branch 'flask' of /home/sam/gene | Zachary Sloan | |
| Conflicts: wqflask/wqflask/templates/index_page.html | |||
| 2013-06-20 | Added file corr_result_helpers.py that includes the function that | Zachary Sloan | |
| normalizes the lists of sample values | |||
| 2013-06-20 | Fixed conflict of merge | Sam | |
| 2013-06-20 | Merge branch 'flask' of git://github.com/leiyan/GeneNetwork2-Python into flask | Zachary Sloan | |
| Conflicts: wqflask/requirements.txt wqflask/wqflask/correlation/show_corr_results.py | |||
| 2013-06-20 | Copied over Lei's correlation code from after he pushed yesterday | Zachary Sloan | |
| 2013-06-19 | Added nginx_conf directory to git tracking | Lei Yan | |
| 2013-06-19 | Fixed issue where the Mean Expr, Max LRS, and Max LRS Location columns | Lei Yan | |
| in the correlation page weren't displaying | |||
| 2013-06-19 | Merge branch 'flask' of git://github.com/zsloan/genenetwork into flask | Lei Yan | |
| Conflicts: wqflask/base/data_set.py | |||
| 2013-06-19 | :Merge git://github.com/zsloan/genenetwork into flask | Lei Yan | |
| Conflicts: wqflask/requirements.txt | |||
| 2013-06-19 | Changed QTL parameter name to "get_qtl_info" on trait.py and | Lei Yan | |
| other places it's called, like search_results.py Added other trait info fields to correlation results page | |||
| 2013-06-19 | When I pulled Sam's code the search page was changed from GET to | Zachary Sloan | |
| POST in views.py, so I had to change it back | |||
| 2013-06-19 | Merge branch 'flask' of git://github.com/leiyan/GeneNetwork2-Python into flask | Zachary Sloan | |
| Conflicts: wqflask/base/data_set.py wqflask/wqflask/views.py Fixed a couple conflicts to merge Lei's code related to the correlation page | |||
| 2013-06-14 | Merge git://github.com/leiyan/GeneNetwork2-Python into flask | Zachary Sloan | |
| Conflicts: wqflask/requirements.txt Made small change for merge with Lei's branch | |||
| 2013-06-13 | Made a few changes while trying to figure out why the search isn't working | Zachary Sloan | |
| post-merging with Sam's code | |||
| 2013-06-13 | Merge /home/sam/gene into flask | Zachary Sloan | |
| Conflicts: wqflask/wqflask/templates/index_page.html Merging the code on Sam's branch onto my own | |||
| 2013-06-13 | Fixed issue where too much memory was used as a result of creating a | Lei Yan | |
| dataset object for each trait in the correlation results Added new fields/columns for each trait in the correlation result table (max LRS, max LRS location, mean expression) Fixed error if trait doesn't have these fields | |||
| 2013-06-13 | Put the template html for the quick search page when all trait types | Zachary Sloan | |
| are displayed in a separate file that is included in quick_search.html | |||
| 2013-06-13 | Small changes | Sam | |
| 2013-06-12 | Fixed a couple issues with the template that caused the | Zachary Sloan | |
| regular search results and show trait page to not display | |||
| 2013-06-11 | Put trait info for correlation results page into a dictionary instead | Lei Yan | |
| of storing list of GeneralTrait objects Added print statements to track memory usage | |||
| 2013-05-31 | Fixed the location column for the quick search page | Zachary Sloan | |
| Began writing some jquery to automatically open the first tab within each species tab on the quick search page (not done yet) | |||
| 2013-05-30 | Rewrote some code in get_trait_info in dataset.py | Lei Yan | |
| Added spearman correlation to show_corr_results and template | |||
| 2013-05-28 | Have correlation values appearing in a table in the template | Lei Yan | |
| Use scipy to calculate pearson correlation instead of old GN code | |||
| 2013-05-23 | Worked on rewriting the function in data_set.py that gets the sample | Lei Yan | |
| values for each trait | |||
 |
index : genenetwork2 | |
| GeneNetwork (2nd generation) |
| aboutsummaryrefslogtreecommitdiff |