| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2019-07-17 | Hopefully fixed the issue with weird characters in search result descriptions | zsloan | |
| 2019-07-17 | Error page should now correctly appear when doing LOCO mapping with GEMMA ↵ | zsloan | |
| (if there's no appropriate genotype file) | |||
| 2019-07-15 | Fixed issue where qnorm values were wrong | zsloan | |
| Fixed issue where traits couldn't be highlighted or added to a collection from global search results Fixed issue where third party links threw an error for some traits on the trait page Fixed issue where clicking a row's link unhighlighted it | |||
| 2019-07-06 | Fixed issue where spaces were inserted into descriptions for mRNA expression ↵ | zsloan | |
| data in the regular search Created default collection name when the user submits a collection without naming it | |||
| 2019-07-03 | Fixed bug for creating one of the third party links on the trait page | zsloan | |
| Changed text in several pages (submit trait, mapping error) Changed header menu structure some | |||
| 2019-07-01 | a | zsloan | |
| 2019-06-30 | Made external links on trait page open new tab/window | zsloan | |
| 2019-06-28 | Added regression lines to correlation scatterplots | zsloan | |
| Fixed bug when doing correlations of non-phenotype traits against phenotype datasets Changed color of manhattan plot points (subject to change) | |||
| 2019-06-25 | Added dropdown generation to REST API and switched to using it to generate ↵ | zsloan | |
| the main search page dropdown | |||
| 2019-06-24 | Fixed issue that caused search result pages to not work in IE | zsloan | |
| 2019-06-24 | Fixed issue that caused API genotypes query to not work when no limit_to set | zsloan | |
| 2019-06-24 | Got non-LOCO GEMMA mapping working with gemma-wrapper (so caching should ↵ | zsloan | |
| work for that now) Fixed position digits and row highlighting on interval analyst table Updated default MAF to 0.05 Updated footer text | |||
| 2019-06-18 | Fixed issue with sorting involving 0's on trait page | zsloan | |
| Fixed links to dataset info pages in search results and correlation results pages | |||
| 2019-06-18 | Changed the text displayed on search results page | zsloan | |
| Added some links to index page Removed footer from search results page | |||
| 2019-06-18 | Phenotype results with long descriptions/authors look much better now + ↵ | zsloan | |
| added some links to index page | |||
| 2019-06-14 | Added some metadata to top of global search results | zsloan | |
| 2019-06-12 | Fixed error when zooming in on chromosome for rat mapping results | zsloan | |
| 2019-06-09 | Had an extra parenthesis to remove | zsloan | |
| 2019-06-09 | Issue with encoding should be fixed for both global searches now | zsloan | |
| 2019-06-09 | Fixed javascript error with phenotype global search | zsloan | |
| 2019-06-09 | Fixed issue that caused heatmap to not work (needed to tell it to use reaper ↵ | zsloan | |
| for generating genotype object) Fixed issue that caused *all* collection page functions to not load correctly (datatables wasn't loading correctly due to a new column being added) | |||
| 2019-06-09 | Added fix for error when records don't have mean expression in global search | zsloan | |
| 2019-06-07 | Global search and correlation results can handle null expression now | zsloan | |
| 2019-06-06 | Made some changes to REST API, including adding limit_to option to mapping | zsloan | |
| 2019-06-06 | Replaced ISNULL with IFNULL (which is the correct version for MySQL) | zsloan | |
| Changed the query form for getting a species' groups | |||
| 2019-06-05 | Ensured that a string is returned for SQL fields that can potentially be null | zsloan | |
| 2019-06-05 | Needed to replace single quotes with double quotes for JSON output | zsloan | |
| 2019-06-05 | Additive effects now display for manhattan plots when available | Pjotr Prins | |
| 2019-06-05 | Issue where manhattan plot points went past the edge of the plot should be ↵ | zsloan | |
| fixed now | |||
| 2019-06-05 | Fixed issue that caused interval mapping to not work because the python ↵ | zsloan | |
| implementation of the reaper Dataset object doesn't include the addinterval method (so for those situations I still use reaper) Fixed issue where the last chromosome wasn't displayed for mapping results (though still need to fix issue where points are drawn too far to the right when a specific range is viewed) | |||
| 2019-06-04 | Updated drop-downs (this probably needs to be separated out of the git ↵ | zsloan | |
| repository) | |||
| 2019-06-04 | Changed the logic for deciding y axis digits to deal with situations where ↵ | zsloan | |
| the range is less tan 0.4; not sure if more than this needs to be accounted for | |||
| 2019-06-04 | Fixed issue with probability plot y axis digits | zsloan | |
| 2019-06-04 | Merge branch 'api' of github.com:zsloan/genenetwork2 into testing | zsloan | |
| 2019-06-04 | Added GeneMANIA link | zsloan | |
| Fixed issue that caused error when creating UCSC RefSeq link Fixed issue that sometimes caused an error for phenotype searches Changed some text on collections page | |||
| 2019-05-31 | Added option to get just trait names from traits query, and also fixed ↵ | zsloan | |
| sample_data query to avoid duplicates | |||
| 2019-05-29 | Added option to get traits from dataset to API | zsloan | |
| 2019-05-24 | Fixed issue where change to making sample table unchecked made all figures ↵ | zsloan | |
| not show up | |||
| 2019-05-24 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into api | zsloan | |
| 2019-05-24 | Added status to error messages | zsloan | |
| 2019-05-24 | Return JSON error instead of html now | zsloan | |
| 2019-05-24 | Made a few changes to trait page: | zsloan | |
| - Changed y axis digits for some figures - Changed title for some figures to trait ID - Removed Min Expr filter when correlating with phenotypes - Changed some button colors - Made sample table rows highlightable | |||
| 2019-05-24 | Added currently api progress, which will henceforth be appropriately ↵ | zsloan | |
| committed in this branch | |||
| 2019-05-24 | Replaced qtlreaper Dataset object with python object | zsloan | |
| 2019-05-23 | Fixed issue where some descriptions caused an error | zsloan | |
| 2019-05-17 | Made check for trait IDs a bit more secure to hopefully avoid any errors ↵ | zsloan | |
| similar to the previous one with a missing unigene id | |||
| 2019-05-17 | Fixed issue that caused error for traits with no unigene id | zsloan | |
| 2019-05-14 | Added all of the third party links from GN1 | zsloan | |
| Fixed issue with the script that generates the drop-down menus where phenotype/genotype datasets wouldn't show up for species without any mRNA assay datasets Added icon for smartphones/tablets Made error more informative for main search Added gene symbol column to collections (need to add something that removes the column if it's all empty) | |||
| 2019-05-08 | Fixed issue where descriptions sometimes had unicode characters appear strangely | zsloan | |
| 2019-05-07 | Added link to GeneBridge to trait page | zsloan | |
 |
index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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