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path: root/wqflask/wqflask/my_pylmm
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2016-01-26Removed a bunch of files/directories/packages that are no longer used and ↵zsloan
some corresponding imports
2015-11-09Fixed issue that caused mapping to not work; for some reason the path to ↵zsloan
pylmm was wrong
2015-07-10Fixed the genofile_parser.py script since some .geno files had been ↵zsloan
incorrectly converted to json Fixed GO search to work with combined searches
2015-05-11pylmm has moved out of the GN2 source tree to ↵pjotrp
https://github.com/genenetwork/pylmm_gn2
2015-04-19pylmm: ReleasePjotr Prins
2015-04-19pylmm: can now be called from GN2 without path setPjotr Prins
2015-04-19pylmm: auto add to pythonpathPjotr Prins
2015-04-19pylmm: move temp_data localPjotr Prins
2015-04-19pylmm: module loadingPjotr Prins
2015-04-19pylmm: Copied benchmark (preparing for a module)Pjotr Prins
2015-04-19pylmm: Edit conflictPjotr Prins
2015-04-19INSTALL infoPjotr Prins
2015-04-18Fix NA to float tranformsPjotr Prins
2015-04-18pylmm: fix integration problemsPjotr Prins
2015-04-18pylmm: fix integration problemsPjotr Prins
2015-04-18Use reduced outputter for GN2 logs tooPjotr Prins
2015-04-17Merge branch 'lmm' of github.com:pjotrp/genenetwork2 into lmmPjotr Prins
2015-04-17Merge branch 'master' into lmmPjotr Prins
2015-04-13Merge branch 'lmm' of github.com:pjotrp/genenetwork2 into lmmPjotr Prins
2015-04-13Added examples for convertlmm.pyPjotr Prins
2015-04-13Improved assertion messagePjotr Prins
2015-04-06Just committing a couple minor bug fixes to get code working after pulling ↵zsloan
Pjotr's latest changes
2015-04-04Regression testsPjotr Prins
2015-04-04Fixing transpose issuesPjotr Prins
2015-04-04Run works without transposesPjotr Prins
2015-04-04Consolidate tests now they all agree for redis, redis_new and runPjotr Prins
2015-04-03- Calculate n,m from the startPjotr Prins
- added test function to runlmm.py to run without Redis (25% faster)
2015-04-03Rename gwas_using_redis to gwas_with_redisPjotr Prins
2015-04-03temp_data is no longer passed aroundPjotr Prins
2015-04-03Refactoring Redis use to one functionPjotr Prins
2015-04-03Passing in an iteratorPjotr Prins
2015-04-03Refactoring GN2 interfacePjotr Prins
2015-04-02Passing in an iteratorPjotr Prins
2015-04-02Prepare iteratorPjotr Prins
2015-04-02Create test geno iteratorPjotr Prins
2015-04-02Release 0.50-gn2Pjotr Prins
2015-04-02Make the new version of genotype normalization defaultPjotr Prins
2015-03-30Refactoring genotype normalizationPjotr Prins
2015-03-30Use of is vs == when testing NonePjotr Prins
2015-03-30Percentage complete: Add method descriptionPjotr Prins
2015-03-30Merge branch 'master' into lmmPjotr Prins
2015-03-30Merge with zsloan masterPjotr Prins
2015-03-23Minor update to get the pylmm code working on my instance of penguinDannyArends
2015-03-23Adding my path to sys.path in pylmmDannyArends
2015-03-20Fall back on calculate_kinship_new againPjotr Prins
2015-03-20Trying to get kinship_old back in lmm1Pjotr Prins
2015-03-18Merge branch 'pylmm0002'Pjotr Prins
Conflicts: wqflask/wqflask/my_pylmm/pyLMM/lmm.py
2015-03-18Tagging 0.50-gn2-pre2Pjotr Prins
2015-03-18Add uses debugPjotr Prins
2015-03-18Aligned gn2 handlers with standalonePjotr Prins
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