genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2017-02-06	Fixed appearance of several tables (search, mapping results, sample data)	zsloan
	Temporarily removed second sample table for CFW traits Fixed location of global search bar to work with wider screens
2017-01-26	GEMMA now works with CFW data (had to update where it looks for the input ↵	zsloan
	files and how it writes the phenotype file) Y-axis for GEMMA now says -log(p) Updated the style of the trait sample data table in the trait page Updated dataset_select_menu_orig.js to also build just the Species and Group drop-downs for the trait input page (as opposed to all 4 drop-downs) Updated dataset menu json file Added option to show and hide columns to regular search page using colVis Changed regular and global search result table styles/column widths Began work on user trait submission code (not working yet though) Began work on static loading page for mapping results
2016-10-11	Merge branch 'pjotr-gn2' into testing	Pjotr Prins

2016-10-09	Add version information	Pjotr Prins

2016-10-07	Make sure JS path exists	Pjotr Prins

2016-10-07	Changed error output	Pjotr Prins

2016-10-07	Saner handling of TMPDIR and TEMPDIR	Pjotr Prins
	Throw error when TMPDIRs are not writable
2016-10-06	Logger: add more granular debug messages	Pjotr Prins

2016-10-05	print statements should be logger	Pjotr Prins

2016-10-03	Config: supporting JSON OVERRIDES	Pjotr Prins

2016-10-03	Debug: sanitize some output	Pjotr Prins

2016-10-02	Errors: added time stamps in UTC	Pjotr Prins

2016-09-25	Make sure MAPPING_PATH exists	Pjotr Prins

2016-09-25	tools: export GENENETWORK_FILES and move cache into TMPDIR/gn2	Pjotr Prins

2016-09-10	Support for running maintenance scripts so they can pick up all webserver ↵	Pjotr Prins
	settings Run with ./bin/genenetwork2 ~/my_settings.py -c ./wqflask/maintenance/gen_select_dataset.py
2016-08-16	Users can now select specific traits from collection when using collection ↵	zsloan
	tools (correlation matrix, wgcna, etc) To do the above, changed the way form submission worked for those features; previously each feature had its own form, but that was dumb so instead I wrote a javascript function that just changed a single form's target url Duplicate traits can no longer by added to collections Fixed the digits for a few table columns in collection (additive effect, etc).
2016-06-26	gn_server: introduced one new query to fetch a dataset record and force ↵	Pjotr Prins
	fetch1 to return a tuple
2016-06-24	Log: and document SQL calls	Pjotr Prins

2016-06-23	Log: SQL queries	Pjotr Prins

2016-06-23	Logger: improved logging	Pjotr Prins

2016-06-23	Logger: prettify	Pjotr Prins

2016-06-23	Settings: add GN_SERVER_URL	Pjotr Prins

2016-06-23	Add warnings for adding MySQLdb cursor	Pjotr Prins

2016-06-21	log: replace print statements	Pjotr Prins

2016-06-21	logger: add format field (reserve)	Pjotr Prins

2016-06-21	Use logger also for benchmarking	Pjotr Prins

2016-06-21	Logger: switch for logging SQLALCHEMY	Pjotr Prins

2016-06-21	Benchmarking: allow output select with LOG_BENCH	Pjotr Prins

2016-06-21	Logger: SQL	Pjotr Prins

2016-06-19	gn_server: Species info can be fetched from gn_server	Pjotr Prins

2016-06-19	gn_server: SQL handling	Pjotr Prins

2016-06-19	Logger: started logging SQL	Pjotr Prins

2016-06-19	logger: adding functionality for SQL	Pjotr Prins
	views.py: simplified code
2016-06-19	Renamed settings so they are grouped together	Pjotr Prins

2016-06-18	Logger: changed level	Pjotr Prins

2016-06-18	Logger: create stub so we can have multiple arguments to log functions	Pjotr Prins

2016-06-18	Logging settings	Pjotr Prins

2016-06-18	Documented logger	Pjotr Prins

2016-06-18	Logger: more info	Pjotr Prins

2016-06-18	Logger: introducing logging	Pjotr Prins

2016-06-18	Logging: behaviours	Pjotr Prins

2016-06-18	Logger: improving output	Pjotr Prins

2016-06-18	Changed file permssions to non-executable	Pjotr Prins

2016-06-18	Disable setting sys.paths	Pjotr Prins

2016-06-18	Logger: introducing logging	Pjotr Prins

2016-06-17	Conflict	Pjotr Prins

2016-06-17	Removed trailing spaces in .py and .js files	Pjotr Prins

2016-06-16	Introduce behaviour parameters to facilitate development	Pjotr Prins

2016-05-17	Merge branch 'staging' of github.com:genenetwork/genenetwork2	zsloan

2016-05-10	Correlation successfully uses materialized views and parallel processing, ↵	zsloan
	but for some reason is taking an immense amount of time so need to troubleshoot that Changed order of mapping options to display Interval Mapping first Changed some links to no longer open in new tab/window