Age | Commit message (Collapse) | Author | |
---|---|---|---|
2013-06-19 | Moved the normalize_values function to separate file corr_result_helpers.py | Lei Yan | |
Added docstring test to normalize_values Number of overlapping samples column now displays correctly in the correlation results page | |||
2013-06-13 | Fixed issue where too much memory was used as a result of creating a | Lei Yan | |
dataset object for each trait in the correlation results Added new fields/columns for each trait in the correlation result table (max LRS, max LRS location, mean expression) Fixed error if trait doesn't have these fields | |||
2013-04-23 | Created file correlation_plot.py for the correlation scatterplot | Zachary Sloan | |
Reverted temp_data.py to previous version that doesn't include the "part" input (for chunks) Made change to lmm related to splitting main iterator into chunks Deleted a bunch of unnecessary commented out code from show_trait.py | |||
2013-04-18 | The plink_input is split into chunks that are stored in temp_data, but | Zachary Sloan | |
we might decide to store it differently | |||
2013-04-17 | Created file with pickled SNPIterator (from input.py) data | Zachary Sloan | |
for HLC datasets Still need to read in file | |||
2013-04-05 | Loading bar now correctly shows the time to completion | Zachary Sloan | |
and the code seems to run correctly | |||
2013-03-12 | Got cashing working with pickle | Zachary Sloan | |
2013-03-07 | Have first 45% of progress bar working | Zachary Sloan | |
Changed "threaded" to True in runserver.py; this fixed issue related to getting progress bar to work | |||
2013-03-07 | Created file temp_data to store data related to progress | Zachary Sloan | |
of the marker regression calculations Storing progress of kinship matrix calculation in variable as portion of 45 (the rough percent of total marker regression calculation time | |||
2013-02-28 | Updated benchmark.py to aggregate run times when you run the | Zachary Sloan | |
operation(s) multiple times | |||
2013-02-28 | Added benchmark.py that compares the time of various operations | Zachary Sloan | |
and gives a report with the percent of total computation time each takes | |||
2013-02-19 | Made lines for manhattan plot proportional to chromosome lengths | Zachary Sloan | |
2013-01-31 | Changed reference to 'dataset_name' in keywords to 'dataset' to get | Zachary Sloan | |
page to work, but will change all references to the dataset name to 'dataset_name' in future to avoid confusion between the dataset name and the actual dataset object | |||
2013-01-22 | Pushed through a few errors in getting the correlation page running | Zachary Sloan | |
2013-01-18 | Renamed CorrelationPage.py to show_corr_results.py | Zachary Sloan | |
Worked with correlation code; got to the code that begins to do the actual correlations Created a function "get_dataset_and_trait" in the new file "helper_functions.py" because the code initializing the dataset and trait objects was repeated in multiple places | |||
2012-09-27 | Worked on getting attributes in the SampleList object to display data ↵ | Zachary Sloan | |
properly, changed SampleList from an object list to object | |||
2012-09-26 | Worked on implementing the extra attributes feature on the trait data page | Zachary Sloan | |
2012-08-29 | Fixed so that outliers are now correctly highlighted | Zachary Sloan | |
2012-08-28 | Various changes related to the webqtlCaseData object and the way ↵ | Zachary Sloan | |
values/variances/num_cases are called in DataEditingPage.py | |||
2012-06-22 | Working my way through getting the review and edit data dynamically ↵ | Sam Ockman | |
generated in Jinja2 | |||
2012-06-05 | Ran reindent.py recursively on wqflask directory | Sam Ockman | |
2012-06-02 | Coming along in trying to get trait page working | Sam Ockman | |
2012-05-24 | Trying to get stuff working under new structure | Sam Ockman | |