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path: root/wqflask/utility/tools.py
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2017-09-04gemma-wrapper: find binary in profilePjotr Prins
2017-06-12Fix binary paths for GEMMA_COMMAND, PYLMM_COMMAND and PLINK_COMMANDPjotr Prins
2017-06-02settings: do not enforce JS pathsPjotr Prins
2017-05-31JS_GUIX_PATH may not be therePjotr Prins
2017-05-31JS module handlingPjotr Prins
2017-05-21Merge from the diet branch.Pjotr Prins
* refactored ./bin/genenetwork2 and /etc/default_settings - better detection of Guix - removed unused parameters, such as GEMMA_RESULT_PATH and TEMP_TRAITS - removing some default settings, such as PYLMM_COMMAND - rename some settings, such as SQL_URI and LOG_SQL_ALCHEMY - added GUIX_JS_PATH for JS modules * Added documentation on installing binary GN2 * Updated Twitter board to latest version in Guix - it had broken * Updated many tools in the latest Guix profile
2017-02-06Fixed appearance of several tables (search, mapping results, sample data)zsloan
Temporarily removed second sample table for CFW traits Fixed location of global search bar to work with wider screens
2017-01-26GEMMA now works with CFW data (had to update where it looks for the input ↵zsloan
files and how it writes the phenotype file) Y-axis for GEMMA now says -log(p) Updated the style of the trait sample data table in the trait page Updated dataset_select_menu_orig.js to also build just the Species and Group drop-downs for the trait input page (as opposed to all 4 drop-downs) Updated dataset menu json file Added option to show and hide columns to regular search page using colVis Changed regular and global search result table styles/column widths Began work on user trait submission code (not working yet though) Began work on static loading page for mapping results
2016-10-11Merge branch 'pjotr-gn2' into testingPjotr Prins
2016-10-09Add version informationPjotr Prins
2016-10-07Make sure JS path existsPjotr Prins
2016-10-07Changed error outputPjotr Prins
2016-10-07Saner handling of TMPDIR and TEMPDIRPjotr Prins
Throw error when TMPDIRs are not writable
2016-10-03Config: supporting JSON OVERRIDESPjotr Prins
2016-10-03Debug: sanitize some outputPjotr Prins
2016-09-25Make sure MAPPING_PATH existsPjotr Prins
2016-09-25tools: export GENENETWORK_FILES and move cache into TMPDIR/gn2Pjotr Prins
2016-09-10Support for running maintenance scripts so they can pick up all webserver ↵Pjotr Prins
settings Run with ./bin/genenetwork2 ~/my_settings.py -c ./wqflask/maintenance/gen_select_dataset.py
2016-06-24Log: and document SQL callsPjotr Prins
2016-06-23Logger: improved loggingPjotr Prins
2016-06-23Settings: add GN_SERVER_URLPjotr Prins
2016-06-21logger: add format field (reserve)Pjotr Prins
2016-06-21Logger: switch for logging SQLALCHEMYPjotr Prins
2016-06-21Benchmarking: allow output select with LOG_BENCHPjotr Prins
2016-06-19gn_server: SQL handlingPjotr Prins
2016-06-19Renamed settings so they are grouped togetherPjotr Prins
2016-06-18Logging settingsPjotr Prins
2016-06-18Logger: more infoPjotr Prins
2016-06-18Logger: introducing loggingPjotr Prins
2016-06-18Logging: behavioursPjotr Prins
2016-06-18Logger: improving outputPjotr Prins
2016-06-18Logger: introducing loggingPjotr Prins
2016-06-17ConflictPjotr Prins
2016-06-17Removed trailing spaces in .py and .js filesPjotr Prins
2016-06-16Introduce behaviour parameters to facilitate developmentPjotr Prins
2016-04-20A few fixes to get the webserver running againPjotr Prins
2016-04-20Show error when GENODIR is missingPjotr Prins
2016-04-20[PATCH 042/100] Sanitizing locationsPjotr Prins
2016-04-20[PATCH 041/100] Fixes for running toolsPjotr Prins
2016-04-20-aPjotr Prins
[PATCH 038/100] Fix compile errors
2016-04-20[PATCH 037/100] WebQtlConfig: sanitizing naming and used varsPjotr Prins
2016-04-20Settled on the _COMMAND syntax over _RUNpjotrp
2016-04-20[PATCH 033/100] Refactored file searchingPjotr Prins
2016-04-20Fine tuning file locatingpjotrp
2016-04-20tools.py: add function locate_without_errorpjotrp
2016-04-20[PATCH 027/100] Introduce tools.locatePjotr Prins
2016-04-20[PATCH 026/100] Introducing cached values PYLMM_COMMAND,Pjotr Prins
GEMMA_COMMAND, PLINK_COMMAND and TEMPDIR
2016-04-20Introducing TEMPDIRpjotrp
2016-04-20[PATCH 024/100] Sanitizing file handlingPjotr Prins
2016-04-20[PATCH 023/100] WIP fixing all pathsPjotr Prins
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