genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2018-04-16	Remove statements that might be causing issues	Muriithi Frederick Muriuki
	* I can't swear on this, but it seems the presence of these statements was causing elasticsearch to act weird.
2018-04-16	Merge remote-tracking branch 'pjotrp/testing' into testing	Muriithi Frederick Muriuki

2018-04-16	Update mappings for Elasticsearch 6.2. Update logger	Muriithi Frederick Muriuki
	* Update the indexes mappings to be compatible with the newer Elasticsearch 6.2.* series. Close the index before updating it, and reopen it after to help with the re-indexing of the data. * Update the error logger to include the exception that was thrown.
2018-04-16	Docs on elasticsearch use	Pjotr Prins

2018-04-15	Deactivate analysis of email_address field	Muriithi Frederick Muriuki
	* Prevent elasticsearch from analysing and tokenising the email_address field so as to avoid issue with getting back all email addresses with the same domain as the one being searched for.
2018-04-05	Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into ↵	Muriithi Frederick Muriuki
	testing
2018-04-04	ES: doc	Pjotr Prins

2018-03-31	Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into ↵	Muriithi Frederick Muriuki
	testing * Fix conflicts
2018-03-26	Refactor startup config for gunicorn and werkzeug	Pjotr Prins

2018-03-26	Fixing authentication stuff so it uses parameters properly. Also no ↵	Pjotr Prins
	PYTHONPATH needed as it is now in the Guix build.
2018-03-26	Update module to make it more testable	Muriithi Frederick Muriuki
	* Update functions to make them more testable. * Update code using updated functions.
2018-03-26	Check elasticsearch at point of use	Muriithi Frederick Muriuki
	* Instead of checking for the state of elasticsearch at startup, check the state at the moment the user requests a feature that depends on elasticsearch. This reduces the chances that the user is dropped onto an exception page when elasticsearch server goes down.
2018-03-26	Add check for elasticsearch	Muriithi Frederick Muriuki
	* Add some extra checks to ensure that elasticsearch is running before presenting the UI to the user.
2018-03-26	Refactor common items to more generic methods.	Muriithi Frederick Muriuki
	* Refactor code that can be used in more than one place to a more generic method/function that's called by other methods
2018-03-26	Fail safely if elasticsearch is down or unconfigured	Muriithi Frederick Muriuki
	* If elasticsearch server is down, or the configuration variables are not provided at startup or in a configuration file, then do not allow the system to simply crash, but instead, inform the user that they cannot use the services that depend on elasticsearch to be running.
2018-03-26	Delay after save for indexing	Muriithi Frederick Muriuki
	* Elasticsearch need a short delay after adding document for it to index the document for subsequent access.
2018-03-26	Add save_user() function	Muriithi Frederick Muriuki
	* On successful login via OAuth2, save the details of the user in elasticsearch store, to avoid hitting the external provider for the basic details.
2018-03-26	Add elasticsearch_tools module	Muriithi Frederick Muriuki
	* Collect variables and functions for using the elasticsearch system in a separate module.
2018-02-15	Fixing authentication stuff so it uses parameters properly. Also no ↵	Pjotr Prins
	PYTHONPATH needed as it is now in the Guix build.
2018-02-13	Update module to make it more testable	Muriithi Frederick Muriuki
	* Update functions to make them more testable. * Update code using updated functions.
2018-02-09	Check elasticsearch at point of use	Muriithi Frederick Muriuki
	* Instead of checking for the state of elasticsearch at startup, check the state at the moment the user requests a feature that depends on elasticsearch. This reduces the chances that the user is dropped onto an exception page when elasticsearch server goes down.
2018-02-09	Add check for elasticsearch	Muriithi Frederick Muriuki
	* Add some extra checks to ensure that elasticsearch is running before presenting the UI to the user.
2018-02-05	Refactor common items to more generic methods.	Muriithi Frederick Muriuki
	* Refactor code that can be used in more than one place to a more generic method/function that's called by other methods
2018-01-30	Fail safely if elasticsearch is down or unconfigured	Muriithi Frederick Muriuki
	* If elasticsearch server is down, or the configuration variables are not provided at startup or in a configuration file, then do not allow the system to simply crash, but instead, inform the user that they cannot use the services that depend on elasticsearch to be running.
2018-01-19	Delay after save for indexing	Muriithi Frederick Muriuki
	* Elasticsearch need a short delay after adding document for it to index the document for subsequent access.
2018-01-19	Add save_user() function	Muriithi Frederick Muriuki
	* On successful login via OAuth2, save the details of the user in elasticsearch store, to avoid hitting the external provider for the basic details.
2018-01-12	Add elasticsearch_tools module	Muriithi Frederick Muriuki
	* Collect variables and functions for using the elasticsearch system in a separate module.