genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2016-12-12	Moved a bunch of functions out of the GeneralTrait class that didn't need to ↵	zsloan
	be there and changed the code that calls them accordingly Improved loadings plot on the correlation matrix page to look like GN1's figure (though it's vector and GN1's was static) Removed some unused code from show_trait.py changed appearance of table headers some, though needs a little more work Updated dataset_menu_structure.json
2016-09-13	Fixed the path for the json file in gen_select_dataset.py since it was wrong ↵	zsloan
	and uncommented simplejson import Added "Reset" option to network graph that returns all the nodes/edges Made the visualization options area in the network graph a little wider
2016-09-13	Run scripts from ./wqflask - just like the webserver	Pjotr Prins

2016-09-10	Comment	Pjotr Prins

2016-09-10	Support for running maintenance scripts so they can pick up all webserver ↵	Pjotr Prins
	settings Run with ./bin/genenetwork2 ~/my_settings.py -c ./wqflask/maintenance/gen_select_dataset.py
2016-06-19	Renamed settings so they are grouped together	Pjotr Prins

2016-06-18	Changed file permssions to non-executable	Pjotr Prins

2016-06-17	Conflict	Pjotr Prins

2016-06-17	Removed trailing spaces in .py and .js files	Pjotr Prins

2016-06-16	Generating the menu is now obsolete	Pjotr Prins

2016-04-20	More hard-coded	pjotrp

2016-02-18	Edited gen_select_dataset to remove confidential datasets	zsloan
	Also hard-coded the removal of Macaque Monkey since I couldn't think of a good way to retroactively check if every dataset in a species is confidential
2016-01-29	Info button should now work for phenotype and genotype datasets	zsloan

2016-01-27	Added info button to Dataset dropdown on index page	zsloan
	Fixed script that generates dataset dropdown json file to include accession id Fixed dataset link on search results page
2015-05-11	Fixed gen_select_dataset so that it does not include Phenotype and	zsloan
	Genotype groups when the corresponding data sets do not exist Interval Mapping no longer shows up for human traits Fixed the appearance of the mirror links on the main page
2014-06-25	Added Karl's correlation matrix code	Zachary Sloan
	Improved the "scatterplot matrix" feature on the trait page so that it matches the chosen trait against every selected trait
2014-05-05	Committing a bunch of changes related to integrating GEMMA and	Zachary Sloan
	adding the correlation matrix page
2013-08-07	Fixed things with the dataset dropdowns and mRNA datasets	Zachary Sloan
	Improved the templates for a couple pages related to changing user password, etc
2013-07-19	Created file gen_group_samplelists that iterates through all genofiles	Zachary Sloan
	and builds each groups' samplelist
2013-07-18	Added Amelie's rat data genotypes	Zachary Sloan
	Got human mapping mostly working Fixed dataset dropdown menus
2013-07-18	Merge branch 'master' of https://github.com/zsloan/genenetwork	Zachary Sloan
	Conflicts: wqflask/base/webqtlConfigLocal.py wqflask/maintenance/gen_select_dataset.py wqflask/wqflask/static/new/javascript/dataset_menu_structure.json
2013-07-18	Added to installation notes	Zachary Sloan
	Removed webqtlConfigLocal file containing passwords Updated main page dropdown menus (dataset_menu_structure.json)
2013-07-17	Fixed gen_select_dataset.py	Zachary Sloan
	Appended redis installation info to notes
2012-10-25	Got the Make Default option working on the home page	Zachary Sloan

2012-10-24	Now builds json datastructure for menus correctly	Zachary Sloan

2012-10-19	Finished gen_select_dataset.py which generates the json file that defines the	Zachary Sloan
	data structure used for the index page select dropdowns
2012-10-19	Reindented genSelectDatasetJS as gen_select_dataset	Zachary Sloan