Age | Commit message (Collapse) | Author |
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- Now use proxy to pull trait data and hide traits/results that the user
doesn't have view permission for
- Created a factory method for creating trait ob so it can return None
when user doesn't have view permissions (this is why such a large number
of files are changed)
- Added metadata to permutation export
- Added current group management code
- Added fixed password verification e-mail code
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queries and a missing import for the hmac functions
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though later I need to go through and redo a bunch of CSS stuff
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indefinitely
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instead of the JSON file without breaking things
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when they're in search results
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to how it decides which mapping methods to display on the trait page
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subset of samples/strains
Also filtered the results used by Christian's genome browser, so now it should have an easier time loading when dealing with larger numbers of markers
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index page header style a little
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just unpublished ones
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ordering phenotype results from searches
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avoid having to restart each time a new dataset is added. Will need to keep an eye out for any issues, but doesn't seem to affect speed much
Fixed logic for UniProt link to use UniProtId instead of protein ID
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Phenotypes name when there's no accession ID
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correctly in certain situations
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Added option to download as JPEG in addition to SVG for basic stats figures
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Added a couple new third party links
Added link to GN1 trait page in trait pages
Fixed gene global search table appearance
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Fixed year to not be a hyperlink when no pubmed id
Fixed first column width so it doesn't go onto two lines for trait details
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Added some information to the mapping loading page
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json file
Removed option to edit certain html pages, like news, policies, etc
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Changed text in several pages (submit trait, mapping error)
Changed header menu structure some
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work for that now)
Fixed position digits and row highlighting on interval analyst table
Updated default MAF to 0.05
Updated footer text
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Fixed links to dataset info pages in search results and correlation results pages
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implementation of the reaper Dataset object doesn't include the addinterval method (so for those situations I still use reaper)
Fixed issue where the last chromosome wasn't displayed for mapping results (though still need to fix issue where points are drawn too far to the right when a specific range is viewed)
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Fixed issue that caused error when creating UCSC RefSeq link
Fixed issue that sometimes caused an error for phenotype searches
Changed some text on collections page
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Fixed issue with the script that generates the drop-down menus where phenotype/genotype datasets wouldn't show up for species without any mRNA assay datasets
Added icon for smartphones/tablets
Made error more informative for main search
Added gene symbol column to collections (need to add something that removes the column if it's all empty)
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Fixed a bug that sometimes occurred in search results
Changed order of items on index page
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or add them to a collection from the corr matrix page,
but you can click them and access them from the trait page. I'll add the option to access them from the corr matrix page as well,
but adding the option to change their names might be trickier since they're currently used as their Redis keys. I need some better
way of passing the Redis key around so it can be stored in collections, but this is tricky without changing the structure in ElasticSearch
- Fixed the way temp traits work so you can use them with various functions, like mapping, correlations, network graph, etc
- Fixed some appearance issue where the network graph options were too wide if a trait name was too long
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Made the outlier notification appear for all mapping methods
Removed some misleading text saying "Block samples" from the Transform and Filter Data section
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Fixed issue where cofactor selection screens were broken
Changed case attributes to be applied across groups, though need to discuss this with Rob since it shouldn't always be done this way
Added new inversion transformation
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instead of integers)
Fixed error that caused N to show up as "null" in the trait sample table instead of "x"
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Fixed some issues with sorting in various tables
Changed header appearance for some pages
Fixed bug where basic stats table would sometimes be duplicated or show up with empty fields
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