genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Expand)	Author
2022-10-04	Add more information to exception to help in debugging	Frederick Muriuki Muriithi
2022-09-26	Remove unused database_connection import from species.py	zsloan
2022-09-25	Fix issue where the display name was used in the hmac for phenotype traits	zsloan
2022-09-22	Provide database cursor as argument for TheSpecies and Chromosomes	Frederick Muriuki Muriithi
2022-09-21	Added Markers/HumanMarkers import to datasetgroup.py and removed it from	zsloan
2022-09-21	Refactor: pass redis and db connections as argument	Frederick Muriuki Muriithi
2022-09-20	Remove global `Dataset_Getter` variable	Frederick Muriuki Muriithi
2022-09-20	Revert "Use member variable `self.conn` to avoid test failure"	Frederick Muriuki Muriithi
2022-09-20	Use member variable `self.conn` to avoid test failure	Frederick Muriuki Muriithi
2022-09-20	Decompose file into separate modulesrefactor-data_set_py-20220920	Frederick Muriuki Muriithi
2022-09-12	Fix query: Add comma to separate columns.	Frederick Muriuki Muriithi
2022-09-12	Fix query: remove wrongly-placed comma	Frederick Muriuki Muriithi
2022-09-12	Check db resultset before indexing into it	Frederick Muriuki Muriithi
2022-09-09	Fix bug in retrieve_other_names	zsloan
2022-09-09	tissue:fetch for query formatting	Alexander_Kabui
2022-09-09	Retain only a single import of the same module	Frederick Muriuki Muriithi
2022-09-09	Merge pull request #732 from BonfaceKilz/bug/fix-broken-correlations	Muriithi Frederick Muriuki
2022-09-09	Fetch sample values correctly	Munyoki Kilyungi
2022-09-09	Add missing import	Munyoki Kilyungi
2022-09-09	Import missing module.	Frederick Muriuki Muriithi
2022-09-09	Filter out Samples without values	Frederick Muriuki Muriithi
2022-09-09	Use `database_connection()`	Frederick Muriuki Muriithi
2022-09-09	Replace `g.db.execute` with `cursor.execute`	Frederick Muriuki Muriithi
2022-09-08	Simplify how chromosomes are fetched	Munyoki Kilyungi
2022-09-08	Remove redundant cursor.fetchone()	Munyoki Kilyungi
2022-09-08	Use "%s" in sql query	Munyoki Kilyungi
2022-09-08	Inject database connection to mrna_assay_tissue_data class	Munyoki Kilyungi
2022-09-08	Fix sql queries	Munyoki Kilyungi
2022-09-08	Add missing "," in cursor.execute()	Munyoki Kilyungi
2022-09-08	Remove intermediate variables that are only used once	Munyoki Kilyungi
2022-09-08	Delete dead imports	Munyoki Kilyungi
2022-09-08	Replace g.db with database_connection() context manager	Munyoki Kilyungi
2022-09-08	Delete logger import	Munyoki Kilyungi
2022-09-08	Replace assertion with Value Error for non-existent dataset	Munyoki Kilyungi
2022-09-08	Replace g.db with database_connection() context manager	Munyoki Kilyungi
2022-09-08	Merge pull request #727 from Alexanderlacuna/feature/use-textfiles	Alexander Kabui
2022-09-07	catch general errors this will recreate the file	Alexander_Kabui
2022-09-06	Fix error with dataset menu query in data_set.py	zsloan
2022-09-06	Merge branch 'testing' into feature/generalize_tables	zsloan
2022-09-06	Set up the self.* variables from query results	Frederick Muriuki Muriithi
2022-09-06	Use dataset name if dataset group name is not set.	Frederick Muriuki Muriithi
2022-08-31	Delete unused modules	Munyoki Kilyungi
2022-08-31	Replace fetchall, fetchone, fetch1 with database_connection	Munyoki Kilyungi
2022-08-31	Remove "with Bench ..." calls	Munyoki Kilyungi
2022-08-31	Remove usage of "logger" and un-necessary comments wrt the same	Munyoki Kilyungi
2022-08-31	add new environment variable:TEXTDIR	Alexander_Kabui
2022-07-12	Include genotypes for F1s/reference/non-reference strains when fetching	zsloan
2022-06-23	Change jsonable in GeneralTrait so that it passes all necessary table	zsloan
2022-06-23	Convert trait.view to string for conversion to JSON	zsloan
2022-06-13	Check for chromosome of 'Un' and print location as 'Not available' in such cases	zsloan