genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2016-07-27	Fixed problem with phenotype traits causing error	zsloan
	Can now remove traits from collections and add to existing collections Fixed a few other minor collection bugs
2016-06-26	gn_server: simplify	Pjotr Prins

2016-06-26	gn_server: simplify	Pjotr Prins

2016-06-26	gn_server: introduced one new query to fetch a dataset record and force ↵	Pjotr Prins
	fetch1 to return a tuple
2016-06-26	Resolve conflicts	Pjotr Prins

2016-06-24	Removed function 'get_info' in trait.py that was never used and reomved ↵	zsloan
	'get_trait_info' call from search_result_page.py because its query was already being run
2016-06-24	Log: and document SQL calls	Pjotr Prins

2016-06-23	Logger: SQL	Pjotr Prins

2016-06-23	Logger: SQL	Pjotr Prins

2016-06-23	Log: SQL queries	Pjotr Prins

2016-06-23	Add fetchall iterator	Pjotr Prins

2016-06-23	Removed dependency on dataset_menu_structure.json	Pjotr Prins

2016-06-23	Backend: moved methods into call module	Pjotr Prins

2016-06-23	Refactored dir name dbFunction to db	Pjotr Prins

2016-06-22	Fixed a couple more errors with the correlation page that occurred when you ↵	zsloan
	selected Tissue correlation with traits from data sets without 'data_ids'
2016-06-21	No longer runs query to get symbol_values_dict when no id_list to fix ↵	zsloan
	occasional error with correlation page
2016-06-18	Logging settings	Pjotr Prins

2016-06-18	Logger	Pjotr Prins

2016-06-18	Logger: replacing print statements	Pjotr Prins

2016-06-18	Changed file permssions to non-executable	Pjotr Prins

2016-06-17	Removed trailing spaces in .py and .js files	Pjotr Prins

2016-06-03	Changed appearance of tables to more easily differentiate them from the rest ↵	zsloan
	of the page (still not totally pleased with them though) Fixed issue where some N/A lrs scores and additive effects were being changed to 0's, which was misleading and kept them from always being sorted at the bottom. They now appear as N/A.
2016-05-31	Fixed error when MrnaAssay search results didn't have a geneid	zsloan

2016-05-31	Allow the json dir to be in the old location.	Pjotr Prins

2016-05-26	Merge branch 'master' of github.com:genenetwork/genenetwork2 into development	zsloan

2016-05-26	Issue with certain samples (like BXD65a, ones were there are multiple for a ↵	zsloan
	single BXD or whatever) should be fixed for different mapping methods and data set types Renamed directories with genotypes so tools.py didn't need to be changed (which might mess up other deployments) Fixed error when searching genotype data sets
2016-05-23	Reaper mapping results are now correct and account for samples with two ↵	zsloan
	names (like BXD65a) R/qtl and PYLMM still not working with the change and bootstrap results are also still wrong, so need to fix those issues.
2016-05-18	Merge branch 'staging' of https://github.com/genenetwork/genenetwork2	zsloan

2016-05-18	Updated dataset selection dropdown menus and fixed error caused by traits ↵	zsloan
	with no description
2016-05-17	Merge branch 'staging' of github.com:genenetwork/genenetwork2 into development	zsloan

2016-05-13	Removing ref. to HTMLPATH	Pjotr Prins

2016-05-13	WebqtlConfig.py: Constant handling	Pjotr Prins

2016-05-13	Fix paths for images	Pjotr Prins

2016-04-29	Merge	Pjotr Prins

2016-04-28	Added option to export permutation results for mapping page	zsloan
	Added data_scale to dataset objects and basic stats table will now check data scale when calculating range Made interval analyst results table work with datatables Changed the appearance of the basic stats table some by giving it a border
2016-04-20	Add file	Pjotr Prins

2016-04-20	-a	Pjotr Prins
	[PATCH 039/100] Removing commented code
2016-04-20	-a	Pjotr Prins
	[PATCH 038/100] Fix compile errors
2016-04-20	[PATCH 037/100] WebQtlConfig: sanitizing naming and used vars	Pjotr Prins

2016-04-20	[PATCH 033/100] Refactored file searching	Pjotr Prins

2016-04-20	[PATCH 032/100] file locating: error checking is built-in	Pjotr Prins

2016-04-20	[PATCH 024/100] Sanitizing file handling	Pjotr Prins

2016-04-20	[PATCH 023/100] WIP fixing all paths	Pjotr Prins

2016-04-19	Merge branch 'master' of github.com:genenetwork/genenetwork2 into development	zsloan
	Conflicts: wqflask/base/trait.py
2016-04-13	Moved the code getting the description/location because it was throwing an ↵	zsloan
	error for phenotype traits
2016-04-13	Global search should be able to return description and location columns now	zsloan

2016-04-11	Figured out how to load results into dataTable using AJAX, but still need to ↵	zsloan
	get it working with Scroller correctly Added code getting the description, etc to trait.py since it was missed from last commit
2016-04-11	Changed the way trait data is retrieved for the global search page (it now ↵	zsloan
	gets the LRS location repr and other variables needed to display in table during the retrieve_info function in trait.py instead of retrieve_trait_info in dataset.py) This change increases the speed by a bit (85 seconds to 66 seconds for example) Made the column width for location a bit wider for global search page so it doesn't spill onto a second line
2016-03-29	Forgot to add GeneralObject file needed for haplotype analyst in last commit	zsloan

2016-03-18	Replaced header with other information in qtl map	zsloan
	Began adding menu to qtl map Fixed global search to not retrieve samples (to increase speed) Got the vector plot working again so it can be displayed alongside the gn1-style plot Only display the vector plot when doing GEMMA to speed up (this might not be necessary)