| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2016-11-02 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into development | zsloan | |
| 2016-11-02 | Added Scroller functionality to regular (but not global) search, which ↵ | zsloan | |
| increases table load speed In order to implement Scroller (and make table look nicer), all rows are the same height and excess description/authors text is shown in a tooltip Increased table width for non-Geno DBs Fixed issue where Genotype traits did not fetch their location_repr (text for displaying location), causing that column to be blank in searches Fixed issue causing Correlation Matrix cells to not be colored corresponding with their correlation and also increased cell font a little Fixed issue where dataset link in the Correlation Page did not correctly point to corresponding GN1 page | |||
| 2016-10-31 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | Pjotr Prins | |
| 2016-10-31 | Merge branch 'master' of github.com:lyan6/genenetwork2 into lyan | Pjotr Prins | |
| 2016-10-29 | For those case that we have multiple genotypes we would like to add a selector. | Lei Yan | |
| 2016-10-25 | Just removed some extraneous spaces in trait.py | zsloan | |
| 2016-10-25 | Replaced the Download Table button for collection page with python version ↵ | zsloan | |
| that displays metadata, etc Removed currently unused javascript and css imports related to the DataTables buttons import (since it was replaced with the python export) from regular search, both global searches, and the view_collection page Added a bunch of parameters to the jsonable function for the GeneralTrait object in order to later create a json version of the search results and implement the client-side Scroller feature (which dynamically loads table rows from json when you scroll) | |||
| 2016-10-07 | Saner handling of TMPDIR and TEMPDIR | Pjotr Prins | |
| Throw error when TMPDIRs are not writable | |||
| 2016-10-06 | Logger: add more granular debug messages | Pjotr Prins | |
| 2016-10-05 | Show datasets only on debug | Pjotr Prins | |
| 2016-10-03 | Debug: sanitize some output | Pjotr Prins | |
| 2016-09-29 | Fix global search "il6" for "Internal Server Error". Add single quotes into ↵ | Lei Yan | |
| MySQL query. | |||
| 2016-09-25 | tools: export GENENETWORK_FILES and move cache into TMPDIR/gn2 | Pjotr Prins | |
| 2016-09-13 | Run scripts from ./wqflask - just like the webserver | Pjotr Prins | |
| 2016-09-10 | Support for running maintenance scripts so they can pick up all webserver ↵ | Pjotr Prins | |
| settings Run with ./bin/genenetwork2 ~/my_settings.py -c ./wqflask/maintenance/gen_select_dataset.py | |||
| 2016-09-02 | Added Network Graph feature that uses cytoscape.js. Currently you can view ↵ | zsloan | |
| GN2 and third party links when clicking a node, view scatterplot when clicking an edge, and edges appearance varies based upon correlation Fixed issue that caused error with correlation page | |||
| 2016-08-24 | Replaced post-publication description with pre-publication description for ↵ | zsloan | |
| confidential phenotype traits in search results and trait pages Fixed table style for mapping results and interval analyst tables and added additive/dominance effect columns to the former Fixed mapping figure X-axis to accurately label Centimorgans vs Megabases (previously it would always say Megabases) Removed the "Sequence Site" marker from mapping result figure when mapping with genetics (centimorgans) scale Removed some unused javascript libary imports from search/global search pages | |||
| 2016-08-16 | Users can now select specific traits from collection when using collection ↵ | zsloan | |
| tools (correlation matrix, wgcna, etc) To do the above, changed the way form submission worked for those features; previously each feature had its own form, but that was dumb so instead I wrote a javascript function that just changed a single form's target url Duplicate traits can no longer by added to collections Fixed the digits for a few table columns in collection (additive effect, etc). | |||
| 2016-08-05 | Fixed issue that caused some interval mapping results to be wrong; the cause ↵ | zsloan | |
| seems to be related to some strains being renamed in the genofiles Added a message to the Add to Collection page warning users that anonymous collections will only be stored for 5 days Updated genofiles | |||
| 2016-07-27 | Problem with phenotype traits should be fixed now | zsloan | |
| 2016-06-26 | gn_server: simplify | Pjotr Prins | |
| 2016-06-26 | gn_server: simplify | Pjotr Prins | |
| 2016-06-26 | gn_server: introduced one new query to fetch a dataset record and force ↵ | Pjotr Prins | |
| fetch1 to return a tuple | |||
| 2016-06-26 | Resolve conflicts | Pjotr Prins | |
| 2016-06-24 | Removed function 'get_info' in trait.py that was never used and reomved ↵ | zsloan | |
| 'get_trait_info' call from search_result_page.py because its query was already being run | |||
| 2016-06-24 | Log: and document SQL calls | Pjotr Prins | |
| 2016-06-23 | Logger: SQL | Pjotr Prins | |
| 2016-06-23 | Logger: SQL | Pjotr Prins | |
| 2016-06-23 | Log: SQL queries | Pjotr Prins | |
| 2016-06-23 | Add fetchall iterator | Pjotr Prins | |
| 2016-06-23 | Removed dependency on dataset_menu_structure.json | Pjotr Prins | |
| 2016-06-23 | Backend: moved methods into call module | Pjotr Prins | |
| 2016-06-23 | Refactored dir name dbFunction to db | Pjotr Prins | |
| 2016-06-22 | Fixed a couple more errors with the correlation page that occurred when you ↵ | zsloan | |
| selected Tissue correlation with traits from data sets without 'data_ids' | |||
| 2016-06-21 | No longer runs query to get symbol_values_dict when no id_list to fix ↵ | zsloan | |
| occasional error with correlation page | |||
| 2016-06-18 | Logging settings | Pjotr Prins | |
| 2016-06-18 | Logger | Pjotr Prins | |
| 2016-06-18 | Logger: replacing print statements | Pjotr Prins | |
| 2016-06-18 | Changed file permssions to non-executable | Pjotr Prins | |
| 2016-06-17 | Removed trailing spaces in .py and .js files | Pjotr Prins | |
| 2016-06-03 | Changed appearance of tables to more easily differentiate them from the rest ↵ | zsloan | |
| of the page (still not totally pleased with them though) Fixed issue where some N/A lrs scores and additive effects were being changed to 0's, which was misleading and kept them from always being sorted at the bottom. They now appear as N/A. | |||
| 2016-05-31 | Fixed error when MrnaAssay search results didn't have a geneid | zsloan | |
| 2016-05-31 | Allow the json dir to be in the old location. | Pjotr Prins | |
| 2016-05-26 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into development | zsloan | |
| 2016-05-26 | Issue with certain samples (like BXD65a, ones were there are multiple for a ↵ | zsloan | |
| single BXD or whatever) should be fixed for different mapping methods and data set types Renamed directories with genotypes so tools.py didn't need to be changed (which might mess up other deployments) Fixed error when searching genotype data sets | |||
| 2016-05-23 | Reaper mapping results are now correct and account for samples with two ↵ | zsloan | |
| names (like BXD65a) R/qtl and PYLMM still not working with the change and bootstrap results are also still wrong, so need to fix those issues. | |||
| 2016-05-18 | Merge branch 'staging' of https://github.com/genenetwork/genenetwork2 | zsloan | |
| 2016-05-18 | Updated dataset selection dropdown menus and fixed error caused by traits ↵ | zsloan | |
| with no description | |||
| 2016-05-17 | Merge branch 'staging' of github.com:genenetwork/genenetwork2 into development | zsloan | |
| 2016-05-13 | Removing ref. to HTMLPATH | Pjotr Prins | |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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