genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2012-12-05	Renamed webqtlTrait.py to trait.py	Zachary Sloan
	Renamed webqtlTrait class to GeneralTrait Began process of removing fd from show_trait.py Created DatasetGroup object in data_set.py (this may end up becoming its own file later if it becomes big enough)
2012-12-05	Continued to make changes related to getting rid of cursor/db_conn	Zachary Sloan
	and using simple sqlalchemy Got Pheno/MrnaAssay dataset searches working again
2012-12-04	Changed parser to allow quotes (i.e. name="rw williams")	Zachary Sloan
	Renamed webqtlTrait to GeneralTrait and began rewriting parts Changed database code in many places to use simple sqlalchemy
2012-12-04	Began changing references to cursor/db_conn to use sqlalchemy	Zachary Sloan
	Wrote function for phenotype author searches
2012-11-30	Started switching to using basic sqlalchemy to handle db connection/queries	Zachary Sloan
	Began fixing bugs related to this fix, still in progress
2012-11-29	Changed a number of variables (riset to group, db to dataset)	Zachary Sloan
	Put most of the code for cisLRS and transLRS searches into the class CisTransLrsSearch (might change this name to something else later) Simplified escape code for searches in do_search.py Got search_results working again after some changes
2012-11-27	Created subclass for each main data set type and moved the code	Zachary Sloan
	for getting trait info that was in search_results.py into its respective class Renamed webqtlDataset to DataSet/create_dataset in webqtlTrait.py, webqtlDatabaseFunction.py, and CorrelationPage.py Got search page running again for mRNA assay data sets with these changes
2012-10-30	Worked on search_result.py code related to adding clause item to queries	Zachary Sloan
	Continued work on redesigning the trait data page design
2012-10-26	Got search page working for mice with a single gene search	Zachary Sloan

2012-09-27	Worked on getting attributes in the SampleList object to display data ↵	Zachary Sloan
	properly, changed SampleList from an object list to object
2012-09-25	Got trait data page running for human dataset, changed list of sample ↵	Zachary Sloan
	objects to a SampleList object
2012-09-25	Fixed issue with parent strains appearing twice and began replacing variable ↵	Zachary Sloan
	names (strain -> sample, for example)
2012-09-19	Made pearson/spearman options disappear if lit correlation is chosen, began ↵	Zachary Sloan
	to address how to deal with Trait object in CorrelationPage
2012-08-28	Various changes related to the webqtlCaseData object and the way ↵	Zachary Sloan
	values/variances/num_cases are called in DataEditingPage.py
2012-06-06	Most of the top fields working	Sam Ockman

2012-06-05	Ran reindent.py recursively on wqflask directory	Sam Ockman

2012-06-03	Before changing fd for trait analysis into a webQTLFormData object	Sam Ockman

2012-06-03	Cleaning up trait stuff in flask	Sam Ockman

2012-05-24	Trying to get stuff working under new structure	Sam Ockman