| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2016-06-23 | Refactored dir name dbFunction to db | Pjotr Prins | |
| 2016-06-17 | Removed trailing spaces in .py and .js files | Pjotr Prins | |
| 2016-06-03 | Changed appearance of tables to more easily differentiate them from the rest ↵ | zsloan | |
| of the page (still not totally pleased with them though) Fixed issue where some N/A lrs scores and additive effects were being changed to 0's, which was misleading and kept them from always being sorted at the bottom. They now appear as N/A. | |||
| 2016-05-31 | Fixed error when MrnaAssay search results didn't have a geneid | zsloan | |
| 2016-05-26 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into development | zsloan | |
| 2016-05-26 | Issue with certain samples (like BXD65a, ones were there are multiple for a ↵ | zsloan | |
| single BXD or whatever) should be fixed for different mapping methods and data set types Renamed directories with genotypes so tools.py didn't need to be changed (which might mess up other deployments) Fixed error when searching genotype data sets | |||
| 2016-05-23 | Reaper mapping results are now correct and account for samples with two ↵ | zsloan | |
| names (like BXD65a) R/qtl and PYLMM still not working with the change and bootstrap results are also still wrong, so need to fix those issues. | |||
| 2016-05-18 | Updated dataset selection dropdown menus and fixed error caused by traits ↵ | zsloan | |
| with no description | |||
| 2016-04-19 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into development | zsloan | |
| Conflicts: wqflask/base/trait.py | |||
| 2016-04-13 | Moved the code getting the description/location because it was throwing an ↵ | zsloan | |
| error for phenotype traits | |||
| 2016-04-13 | Global search should be able to return description and location columns now | zsloan | |
| 2016-04-11 | Figured out how to load results into dataTable using AJAX, but still need to ↵ | zsloan | |
| get it working with Scroller correctly Added code getting the description, etc to trait.py since it was missed from last commit | |||
| 2016-04-11 | Changed the way trait data is retrieved for the global search page (it now ↵ | zsloan | |
| gets the LRS location repr and other variables needed to display in table during the retrieve_info function in trait.py instead of retrieve_trait_info in dataset.py) This change increases the speed by a bit (85 seconds to 66 seconds for example) Made the column width for location a bit wider for global search page so it doesn't spill onto a second line | |||
| 2016-03-18 | Replaced header with other information in qtl map | zsloan | |
| Began adding menu to qtl map Fixed global search to not retrieve samples (to increase speed) Got the vector plot working again so it can be displayed alongside the gn1-style plot Only display the vector plot when doing GEMMA to speed up (this might not be necessary) | |||
| 2016-03-14 | Changed the way headers look across all pages | zsloan | |
| Changed the way details are displayed in show trait page Changed search query so that it orders results by symbol | |||
| 2016-03-02 | Increased gsearch speed by removing unnecessary query for sample data | zsloan | |
| Still slower than preferable due to having to query the gn1 database for every trait in the search results | |||
| 2015-07-09 | Some phenotype searches were throwing an error due to an assert statement in ↵ | zsloan | |
| trait.py. Since I couldn't find the purpose of the assert statement I removed it. | |||
| 2015-06-29 | Merge pull request #72 from lomereiter/issue69 | zsloan | |
| Fixes #69 | |||
| 2015-06-22 | fixed a few potential security issues | Artem Tarasov | |
| 2015-06-18 | fix all_samples_ordered | Artem Tarasov | |
| move duplicated code into a method, handle the case of missing f1/f12 correctly | |||
| 2015-05-22 | Fixed issue where correlation didn't work for human traits (and probably ↵ | zsloan | |
| some others) | |||
| 2015-05-12 | Fix #35 | Artem Tarasov | |
| * 'aliases' and 'location' are shown only where relevant * descriptions for phenotype datasets are provided at the top | |||
| 2015-04-10 | Added git large file system (the .gitattributes files) and fixed an issue ↵ | zsloan | |
| where rat trait pages wouldn't work | |||
| 2014-12-12 | Added a additive effect column to search result and collection tables | Zachary Sloan | |
| Fixed the header so that it looks fine when resizing | |||
| 2014-10-02 | Fixed an error when there's no locus for mRNA expression traits | Zachary Sloan | |
| 2014-08-21 | Committer: Lei Yan <lei@penguin.uthsc.edu> | Lei Yan | |
| On branch master | |||
| 2014-06-25 | Added Karl's correlation matrix code | Zachary Sloan | |
| Improved the "scatterplot matrix" feature on the trait page so that it matches the chosen trait against every selected trait | |||
| 2014-06-06 | Implimented Karl Broman's lodchart code for the interval mapping function. | Zachary Sloan | |
| Suggestive/significant bars and additive effect curve added | |||
| 2013-11-27 | Clicking a trait in "color by trait" now gets all of its sample values | Zachary Sloan | |
| that will be used to color the bar graph | |||
| 2013-11-26 | Made some progress towards getting the traits inside a collection to display ↵ | Zachary Sloan | |
| on hover | |||
| 2013-11-25 | Got the interval mapping results into a table | Zachary Sloan | |
| 2013-11-01 | Merge /home/sam/gene | Zachary Sloan | |
| 2013-10-30 | More work on collections | Sam | |
| 2013-10-25 | Began working on color coding bar chart by extra attributes | Zachary Sloan | |
| 2013-09-13 | Merge https://github.com/zsloan/genenetwork | Lei Yan | |
| Resolved conflicts: wqflask/base/trait.py wqflask/wqflask/correlation/correlationFunction.py wqflask/wqflask/correlation/correlation_function.py wqflask/wqflask/correlation/correlation_functions.py wqflask/wqflask/correlation/show_corr_results.py | |||
| 2013-08-07 | Fixed things with the dataset dropdowns and mRNA datasets | Zachary Sloan | |
| Improved the templates for a couple pages related to changing user password, etc | |||
| 2013-07-18 | Added Amelie's rat data genotypes | Zachary Sloan | |
| Got human mapping mostly working Fixed dataset dropdown menus | |||
| 2013-07-16 | Wrote code that can get a dataset's type for every single GN | Zachary Sloan | |
| dataset; previously we could not view traits in datasets that were not in the DBType table in the database | |||
| 2013-06-25 | Merge git://github.com/zsloan/genenetwork into flask | Lei Yan | |
| 2013-06-20 | Merge branch 'flask' of git://github.com/leiyan/GeneNetwork2-Python into flask | Zachary Sloan | |
| Conflicts: wqflask/requirements.txt wqflask/wqflask/correlation/show_corr_results.py | |||
| 2013-06-19 | Moved the normalize_values function to separate file corr_result_helpers.py | Lei Yan | |
| Added docstring test to normalize_values Number of overlapping samples column now displays correctly in the correlation results page | |||
| 2013-06-19 | Fixed issue where the Mean Expr, Max LRS, and Max LRS Location columns | Lei Yan | |
| in the correlation page weren't displaying | |||
| 2013-06-19 | Merge branch 'flask' of git://github.com/zsloan/genenetwork into flask | Lei Yan | |
| Conflicts: wqflask/base/data_set.py | |||
| 2013-06-19 | Changed QTL parameter name to "get_qtl_info" on trait.py and | Lei Yan | |
| other places it's called, like search_results.py Added other trait info fields to correlation results page | |||
| 2013-06-19 | Merge branch 'flask' of git://github.com/leiyan/GeneNetwork2-Python into flask | Zachary Sloan | |
| Conflicts: wqflask/base/data_set.py wqflask/wqflask/views.py Fixed a couple conflicts to merge Lei's code related to the correlation page | |||
| 2013-06-13 | Fixed issue where too much memory was used as a result of creating a | Lei Yan | |
| dataset object for each trait in the correlation results Added new fields/columns for each trait in the correlation result table (max LRS, max LRS location, mean expression) Fixed error if trait doesn't have these fields | |||
| 2013-06-11 | Put trait info for correlation results page into a dictionary instead | Lei Yan | |
| of storing list of GeneralTrait objects Added print statements to track memory usage | |||
| 2013-05-31 | Fixed the location column for the quick search page | Zachary Sloan | |
| Began writing some jquery to automatically open the first tab within each species tab on the quick search page (not done yet) | |||
| 2013-05-30 | Rewrote some code in get_trait_info in dataset.py | Lei Yan | |
| Added spearman correlation to show_corr_results and template | |||
| 2013-05-08 | Worked on correlation page | Lei Yan | |
| Wrote function in dataset.py that gets all the traits in a dataset and their sample values | |||
 |
index : genenetwork2 | |
| GeneNetwork (2nd generation) |
| aboutsummaryrefslogtreecommitdiff |