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2024-03-05Fix missed bug: Don't use `gn2.utility.tools` for configs.Frederick Muriuki Muriithi
2024-03-05configs: Fetch configs from app not `gn2.utility.tools`Frederick Muriuki Muriithi
Fetch configurations from the application, rather than from the `gn2.utility.tools` module that does not get the updated values from the secrets file.
2024-03-05Pick secrets from config file.Frederick Muriuki Muriithi
2024-02-29Fix URI to queryFrederick Muriuki Muriithi
2024-02-21Merge pull request #834 from genenetwork/chores/replace-js-external-linksAlexander Kabui
Replacing JS External Links with Guix Packages
2024-02-21use font-awesome version 4.7.0Alexander_Kabui
2024-02-19Fix font pathszsloan
2024-02-16pep8 formattingAlexander_Kabui
2024-02-16Add gnqa error pageAlexander_Kabui
2024-02-16init check for user loginAlexander_Kabui
2024-02-16fix for gnqa-ui:replace gnqa history buttonAlexander_Kabui
2024-02-15replace emfed cdn with local static filesAlexander_Kabui
2024-02-15add emfed js file to static filesAlexander_Kabui
2024-02-15add emfed style file locallyAlexander_Kabui
2024-02-15fix font awesome package pathAlexander_Kabui
2024-02-15Rework how the tissueInfo and platformInfo are fetched in template.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-02-15Add display of experiment type to dataset template.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-02-15replace cdn uikit with guix packageAlexander_Kabui
2024-02-14replace d3js libAlexander_Kabui
2024-02-14replace jquery-ui cdn with guix packagingAlexander_Kabui
2024-02-14replace cdn jquery.js with guix packageAlexander_Kabui
2024-02-14remove bootstrap js external linkAlexander_Kabui
2024-02-14replace bootstrap external linkAlexander_Kabui
2024-02-14replace datatable cdn links with guix packagesAlexander_Kabui
2024-02-14fetch xterm cdn from guixAlexander_Kabui
2024-02-14replace font awesome external linksAlexander_Kabui
2024-01-30Error reporting: Pass external error forward to GN2's error handlingFrederick Muriuki Muriithi
2024-01-30Create framework for error handling and handle connection errorsFrederick Muriuki Muriithi
2024-01-25fix on UI wordingAlexander_Kabui
2024-01-25fix issue loading gnqa prev queries on base fileAlexander_Kabui
2024-01-25add view point for gnqa search historyAlexander_Kabui
2024-01-25Add modal for search historyAlexander_Kabui
2024-01-19Add list panel implementationAlexander_Kabui
2024-01-18fix for qnqa ui letter spacingAlexander_Kabui
2024-01-16fix typo errorAlexander_Kabui
2024-01-16add UI for reference rating gn-llm documentsAlexander_Kabui
2024-01-12Correctly patch the db connection when fetching accession_id.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Co-authored-by: Alexander Kabui <alexanderkabua@gmail.com>
2024-01-12Switch NCBI link from http to https in failing test and RDF query.Munyoki Kilyungi
* gn2/tests/wqflask/show_trait/test_show_trait.py (test_get_ncbi_summary_request): Replace "http://eutils.ncbi.nlm.nih.gov" with "https://eutils.ncbi.nlm.nih.gov" * gn2/wqflask/views.py (get_probeset): Ditto. Co-authored-by: Alexander Kabui <Alexanderkabua@gmail.com> Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-01-10Check whether the metadata.dataset group first exists.Munyoki Kilyungi
* gn2/wqflask/templates/genotype.html: Add metadata.dataset check in and clause. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-01-10Add a compare button that shows the current genotype page.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-01-10Add dataset metadata to genotype page when a dataset is specified.Munyoki Kilyungi
* gn2/wqflask/templates/genotype.html: Add extra dataset metadata. * gn2/wqflask/views.py (get_genotype): Extend genotype URL to enable specifying the dataset name. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-01-09Fix the way accession_id is set + update info link on correlation pagezsloan
2024-01-09Update script's module path.Frederick Muriuki Muriithi
2024-01-09Update module pathsFrederick Muriuki Muriithi
With the reorganisation, a number of module paths changed, and need to be updated. This commit fixes a few obvious ones.
2024-01-08Update default permutations for R/qtl to 0zsloan
2024-01-08Update ncbi summary link to https, since before it was spending extra time ↵zsloan
trying (and failing) to query the http link before trying https
2024-01-08Update DB info link on search result page and trait pagezsloan
2024-01-08Fix issue where mapmodel_rqtl and mapmethod_rqtl were still named ↵zsloan
mapmodel_rqtl_geno and mapmethod_rqtl_geno respectively
2024-01-08Add a compare button that shows the current probeset page.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-01-08Include Entrez summary for a geneID on the ProbeSet page.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>