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2024-08-28Make UI items more flexible.Frederick Muriuki Muriithi
2024-08-28Remove flawed "group role" idea: use just "role".Frederick Muriuki Muriithi
2024-08-28Remove deprecated endpoints/views and templatesFrederick Muriuki Muriithi
2024-08-28Fix error display logicFrederick Muriuki Muriithi
2024-08-28Fetch the active user's roles on a particular resource.Frederick Muriuki Muriithi
2024-08-28Use privilege objects rather than IDS.Frederick Muriuki Muriithi
2024-08-28Delete request to obsoleted endpoint.Frederick Muriuki Muriithi
2024-08-28Create a new resource role.Frederick Muriuki Muriithi
2024-08-28Update URI formsFrederick Muriuki Muriithi
2024-08-28Use json for communication with gn-authFrederick Muriuki Muriithi
2024-08-28Provide UI to delete role.Frederick Muriuki Muriithi
2024-08-28List user assigned role of interest.Frederick Muriuki Muriithi
2024-08-28Organise UI into rows: each row holding related data.Frederick Muriuki Muriithi
2024-08-28Unassign privilege from resource role.Frederick Muriuki Muriithi
2024-08-28Import the UUID class directly.Frederick Muriuki Muriithi
2024-08-28Implement "Resource Role Page"Frederick Muriuki Muriithi
Show the page, providing all UI elements necessary, even if the elements themselves are not active.
2024-08-28Generalise `render_ur` for the resources pagesFrederick Muriuki Muriithi
2024-08-28Set default headers for OAuth2Client requests.Frederick Muriuki Muriithi
2024-08-28Simplify 'View-Resource page' UIFrederick Muriuki Muriithi
Get rid of the resource role details and provide button-like elements to help navigate to view more details.
2024-08-28PoC: Display resource roles on View-Resource page.Frederick Muriuki Muriithi
2024-08-28Update UI: Use resource roles rather than obsolete group rolesFrederick Muriuki Muriithi
In a fix to fix a privilege-escalation bug, the `…/group/roles` endpoint was entirely removed and replaced with the less error-prone `…/resource/…/roles` endpoint. This commit updates the code to use the new endpoint's data as appropriate. We also fix typos in some url_for routing arguments.
2024-08-28UI: Add placeholder for resource rolesFrederick Muriuki Muriithi
2024-08-28Fix displayed error messageFrederick Muriuki Muriithi
2024-08-28Remove the "Roles" page.Frederick Muriuki Muriithi
2024-08-28Deactivate the "create_role" functionFrederick Muriuki Muriithi
The `create_role` function could lead to privilege escalation. This commit deactivates it completely to prevent the chance of that happening.
2024-08-28Bug: Add missing data to search query.Frederick Muriuki Muriithi
2024-08-28Build search URI endpoint on server rather than on JSFrederick Muriuki Muriithi
To help with maintenance, build the search URI on the server rather than in the javascript.
2024-08-28Build phenotype results template URI on backendFrederick Muriuki Muriithi
Build the template URI on the backend to remove the need to remember to update the javascript if the URI changes in the future.
2024-08-28Provide client data used for user verification.Frederick Muriuki Muriithi
2024-08-28Handle generic OAuthError gracefullyFrederick Muriuki Muriithi
2024-08-28Ensure endpoint returns a response.Frederick Muriuki Muriithi
2024-08-28Enable NA sorting for case attributeszsloan
The NA-excluding sort functions were moved to table_functions.js (and removed from search_results.js) so they can be used by other pages (in this case the show_trait page)
2024-08-28Bug: Compute numeric timestamp for the claims.Frederick Muriuki Muriithi
2024-08-28Check if case attribute for RRID is a list, to prevent it being added twice ↵zsloan
in situations where a sample appears in both the parent/f1 file and the .geno file
2024-08-28Change default for Mean Expr filter to OR for correlations to avoid ↵zsloan
excluding any results when the page first loads
2024-08-28Remove styling for search field.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-08-28Check metadata exists before setting 'editable' field in get_dataset.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-08-28Revert "Feature/gnqa search history"Alexander Kabui
2024-08-26Allow '@' and '.' characters in searcheszsloan
This is mainly so e-mail searches work
2024-08-26Set fixed width of 500px for phenotype descriptionszsloan
2024-08-21Fix timestamp attribute nameszsloan
They were previously stored as 'created_timestamp' and 'changed_timestamp', but are now stored as 'created' and 'changed'
2024-08-19Edit Haplotype Analyst legend contentzsloan
- Change order from Pat/Mat to Mat/Pat - Increase width of example color bars - Change 'Unk' to 'Unknown' and shift everything to the left so it fits
2024-08-19Change 'Sequence Site' text to 'Gene Location'zsloan
2024-08-19Only draw position marker if position existszsloan
Previous it was drawing the marker at the end of the map even when mapping with traits that don't have a position (like Publish/phenotype traits)
2024-08-19Remove javascript escape function from View Collection page to fix encoding ↵zsloan
issues
2024-08-16Add Wiki and RIF search terms to Xapian normal searchzsloan
2024-08-07Merge pull request #855 from jnduli/gn2_profiles_pagesMuriithi Frederick Muriuki
Gn2 Fix profiles pages dashboard
2024-08-07chore: remove passing bearer token to end userJohn Nduli
2024-08-07fix: remove bearer token from html and javascriptJohn Nduli
2024-08-06fix: use bearer token to query auth serverJohn Nduli