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necessary for them to show up correctly when selecting traits from collections in pop-up windows, like when selecting cofactors for mapping)
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Account for temp traits when adding covariates with GEMMA mapping
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This name clashes with "def news" which is defined later.
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Remove unused imports and break up long imports into shorter lines.
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It's in-efficient to have a sql query executed in a loop. As data
grows, the query becomes slower. It's better to let sql handle such
queries.
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previously it could throw an error
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collection the use set as their default collection
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input string
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instead of just checking if there are case attributes
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instead check categorical_attr_exists
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apparently the boolean doesn't get passed to the template properly
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case attributes with fewer than 10 distinct values, since it currently throws a JS error if case attributes exist but none have fewer than 10 distinct values (specifically when we have RRID as a case attribute)
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with calculating PCA that I don't know the cause of yet
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many shared samples torun scipy.stats.pearsonr/spearmanr
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error caused by an empty string be stored in a collection's trait list
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number is needed for the links
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Redis as both string and bytes
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drawing the Gene Band
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rat IDs don't have any prefix with a colon
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situations where a case attribute also has a link
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in the trait page sample table
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being returned as bytes instead of a str
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