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genenetwork2
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blatseq_fix
chores/code-refactoring
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refactor-data_set_py-20220920
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2022-10-05
fix bug use target dataset for top n correlation
Alexander_Kabui
2022-10-05
remove data preprocessing for top n samples
Alexander_Kabui
2022-10-05
mechanical-rob: Fix tests that were checking for the wrong thing
Frederick Muriuki Muriithi
2022-10-05
Handle correlation error
Frederick Muriuki Muriithi
2022-10-05
Bug: Check for compatible datasets for a correlation type
Frederick Muriuki Muriithi
2022-10-05
bug: Use target dataset when computing tissue correlations
Frederick Muriuki Muriithi
2022-10-04
Fix bug where dataset_name was being passed into get_samplelist query instead...
zsloan
2022-10-04
Pass redis_conn to get_samplelist
zsloan
2022-10-04
Initialize result_list for /traits endpoint JSON output
zsloan
2022-10-04
Remove unnecessary variable
Frederick Muriuki Muriithi
2022-10-04
Add more information to exception to help in debugging
Frederick Muriuki Muriithi
2022-10-03
Bug: Don't process data for output early
Frederick Muriuki Muriithi
2022-09-30
Reformat statement
Frederick Muriuki Muriithi
2022-09-30
Remove unused table and simplify query
Frederick Muriuki Muriithi
2022-09-30
Raise hard-limit on search results to 10k.
Arun Isaac
2022-09-30
Disregard permissions when displaying search results.
Arun Isaac
2022-09-29
Fix identation issues in attribute query code
zsloan
2022-09-29
Curry function passed to Maybe.apply.
Arun Isaac
2022-09-29
Hard-limit the number of search results.
Arun Isaac
2022-09-29
Support prefix search and range queries.
Arun Isaac
2022-09-29
Retrieve year as integer.
Arun Isaac
2022-09-29
Index prefixed fields and add values.
Arun Isaac
2022-09-29
Replace MonadicDictCursor with generator function.
Arun Isaac
2022-09-29
Open xapian database once, but SQL database once for each query.
Arun Isaac
2022-09-29
Remove empty first line in docstrings.
Arun Isaac
2022-09-29
Ignore None values early when initializing MonadicDict.
Arun Isaac
2022-09-29
Return monadic value from MonadicDictCursor.fetchone.
Arun Isaac
2022-09-29
Abstract out writing documents into a xapian database.
Arun Isaac
2022-09-29
Close xapian database even if error occurs.
Arun Isaac
2022-09-29
Remove empty rows, and conversion for output
Frederick Muriuki Muriithi
2022-09-29
Add test for regression
Frederick Muriuki Muriithi
2022-09-28
Do not assume transactions in database connections.
Arun Isaac
2022-09-27
Fix indentation in get_species_list for-loop
zsloan
2022-09-27
Unit Test: Fix unit test for Chromosome functions.
Frederick Muriuki Muriithi
2022-09-26
Add REST API endpoint for viewing a group's genotype file metadata
zsloan
2022-09-26
Get heatmap and mapping working again with changing to species.py
zsloan
2022-09-26
Remove unused database_connection import from species.py
zsloan
2022-09-26
Implement global search using xapian.
Arun Isaac
2022-09-26
Add indexing script for global search.
Arun Isaac
2022-09-26
Add xapian database connection utilities.
Arun Isaac
2022-09-26
Generalize sql_uri function to get any setting.
Arun Isaac
2022-09-25
Fix issue where the display name was used in the hmac for phenotype traits
zsloan
2022-09-23
Remove click handler on global search.
Arun Isaac
2022-09-23
Check docstring style using pylint.
Arun Isaac
2022-09-22
Fix bug in GeneUtil.py query where extra quotes caused an error
zsloan
2022-09-22
Use passed in cursor instead of initialising a new cursor.
Frederick Muriuki Muriithi
2022-09-22
Provide database cursor as argument for TheSpecies and Chromosomes
Frederick Muriuki Muriithi
2022-09-22
Update tests: pass in missing arguments.
Frederick Muriuki Muriithi
2022-09-21
Added Markers/HumanMarkers import to datasetgroup.py and removed it from
zsloan
2022-09-21
Refactor: pass redis and db connections as argument
Frederick Muriuki Muriithi
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