| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2024-08-29 | Rename entries -> wiki. | Munyoki Kilyungi | |
| * gn2/wqflask/views.py (display_genewiki_page)[entries]: Rename entries to wiki. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-29 | Remove gn-entries from NCBI. | Munyoki Kilyungi | |
| Will re-add this section once the API is finalised. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-29 | Apply dj-lint jinja linter against genewiki.html. | Munyoki Kilyungi | |
| * gn2/wqflask/templates/genewiki.html: Run: ``` djlint gn2/wqflask/templates/genewiki.html \ --profile=jinja --reformat --format-css \ --format-js ``` Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-29 | Rename generif -> genewiki. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-29 | Auto-pep8 file. | Munyoki Kilyungi | |
| * gn2/wqflask/views.py: Run auto-pep8 against file. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-29 | Add delete to monad requests http methods. | Alexander_Kabui | |
| 2024-08-29 | Update docstring for put. | Alexander_Kabui | |
| 2024-08-29 | Add put method to monad requests. | Alexander_Kabui | |
| 2024-08-29 | Modify gnqna search method from post to put. | Alexander_Kabui | |
| 2024-08-29 | Add htmx js api for delete functionality. | Alexander_Kabui | |
| 2024-08-29 | integrate gnqa history delete functionality. | Alexander_Kabui | |
| 2024-08-29 | Handle attributeError when getting error codes. | Alexander_Kabui | |
| 2024-08-29 | BugFix: return correct status code for generic exceptions handler. | Alexander_Kabui | |
| 2024-08-29 | Fix bug: Update DOM correctly when rating error occurs. | Alexander_Kabui | |
| 2024-08-29 | Mark answer and references as safe to render a tags. | Alexander_Kabui | |
| 2024-08-29 | Add UI code for gnqa history search delete functionality. | Alexander_Kabui | |
| 2024-08-29 | Update endpoints and add search history functionality. | Alexander_Kabui | |
| 2024-08-29 | View file code cleanup for gnqa. | Alexander_Kabui | |
| 2024-08-29 | Refactor template code for gnqa search history | Alexander_Kabui | |
| 2024-08-28 | Allow '@' and '.' characters in searches | zsloan | |
| This is mainly so e-mail searches work | |||
| 2024-08-28 | Set fixed width of 500px for phenotype descriptions | zsloan | |
| 2024-08-28 | Fix timestamp attribute names | zsloan | |
| They were previously stored as 'created_timestamp' and 'changed_timestamp', but are now stored as 'created' and 'changed' | |||
| 2024-08-28 | Edit Haplotype Analyst legend content | zsloan | |
| - Change order from Pat/Mat to Mat/Pat - Increase width of example color bars - Change 'Unk' to 'Unknown' and shift everything to the left so it fits | |||
| 2024-08-28 | Change 'Sequence Site' text to 'Gene Location' | zsloan | |
| 2024-08-28 | Only draw position marker if position exists | zsloan | |
| Previous it was drawing the marker at the end of the map even when mapping with traits that don't have a position (like Publish/phenotype traits) | |||
| 2024-08-28 | Remove javascript escape function from View Collection page to fix encoding ↵ | zsloan | |
| issues | |||
| 2024-08-28 | Add Wiki and RIF search terms to Xapian normal search | zsloan | |
| 2024-08-28 | chore: remove passing bearer token to end user | John Nduli | |
| 2024-08-28 | fix: remove bearer token from html and javascript | John Nduli | |
| 2024-08-28 | fix: use bearer token to query auth server | John Nduli | |
| 2024-08-28 | fix: pass in proper list of priviledge_ids | John Nduli | |
| 2024-08-28 | Fix typo. | Frederick Muriuki Muriithi | |
| 2024-08-28 | minor code formatting. | Frederick Muriuki Muriithi | |
| 2024-08-28 | Update JWKs endpoint documentation. | Frederick Muriuki Muriithi | |
| 2024-08-28 | Fix URL | Frederick Muriuki Muriithi | |
| 2024-08-28 | Override 'client_secret_post' auth with a JSON equivalent | Frederick Muriuki Muriithi | |
| In order to use JSON consistently across the board, we make even the authentication method use JSON rather than FORMDATA. | |||
| 2024-08-28 | Move check for target_trait mb/chr into the if statement for ProbeSet/Geno ↵ | zsloan | |
| datasets Previously it would throw an error for Publish datasets, since they don't have a location | |||
| 2024-08-28 | Consistently use JSON for all endpoints. | Frederick Muriuki Muriithi | |
| 2024-08-28 | Add mariadb package to database development container. | Arun Isaac | |
| * containers/db-container.scm (operating-system)[packages]: Add mariadb. | |||
| 2024-08-28 | Remove obsolete configurations. | Frederick Muriuki Muriithi | |
| 2024-08-28 | bug: add missing `count_per_page` variable. | Frederick Muriuki Muriithi | |
| 2024-08-28 | Use auto-created and auto-rotated JSON Web Keys | Frederick Muriuki Muriithi | |
| Use auto-created JWKs for better security. | |||
| 2024-08-28 | Use JWKs from auth server public endpoint | Frederick Muriuki Muriithi | |
| * Fetch keys from auth server * Validate token is signed with one of the keys from server * Ensure refreshing of token is still synchronised | |||
| 2024-08-28 | Add module to help with rotation of JSON Web Keys. | Frederick Muriuki Muriithi | |
| 2024-08-28 | Fix correlation bug caused by a result trait not having a location | zsloan | |
| 2024-08-28 | Fix misnamed variable that caused correlation location filter to not work | zsloan | |
| 2024-08-28 | Fix collections import by allowing GET method for collections/add endpoint | zsloan | |
| 2024-08-28 | Improve logging | Frederick Muriuki Muriithi | |
| Add more logging information to help with tracking and fixing bugs. | |||
| 2024-08-28 | Synchronise token refreshes | Frederick Muriuki Muriithi | |
| The application can be run in a multi-threaded server, leading to a situation where the multiple threads attempt to get a new JWT using the exact same refresh token. This synchronises the various threads ensuring only a single thread is able to retrieve the new JWT that all the rest of the threads then use. | |||
| 2024-08-28 | Fix GN3 URIs for case attribute editing | zsloan | |
| Also improve error logging somewhat (but still need to properly display the error in a template) | |||
 |
index : genenetwork2 | |
| GeneNetwork (2nd generation) |
| aboutsummaryrefslogtreecommitdiff |