| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2018-03-26 | Add template elements for OAuth login | Muriithi Frederick Muriuki | |
| * Add html elements that will be used to prompt users to login with either GitHub or ORCID. | |||
| 2018-03-26 | Add configuration variables for external services | Muriithi Frederick Muriuki | |
| * Add configuration variables for GitHub and ORCID which will be used by the system to allow users to login. | |||
| 2018-03-21 | Use logger.info instead of logger.debug, fixes ↵ | Pjotr Prins | |
| https://github.com/genenetwork/genenetwork2/issues/296 | |||
| 2018-03-21 | Skip automatic use of EXPLAIN_TEMPLATE_LOADING. | Pjotr Prins | |
| 2018-03-20 | Refactor startup config for gunicorn and werkzeug | Pjotr Prins | |
| 2018-03-20 | Fix | Pjotr Prins | |
| 2018-03-20 | Authentication: some mods around defaults | Pjotr Prins | |
| 2018-03-19 | RELEASENOTES | Pjotr Prins | |
| 2018-03-19 | - Disabled PYTHONPATH injection - fix Guix instead, see ↵ | Pjotr Prins | |
| https://github.com/pjotrp/genenetwork2/commit/63a5c8a42ad02e9126bb207465ff5eca98f6515d - Renamed WQFLASK_SETTINGS to GN2_SETTINGS | |||
| 2018-03-19 | Merge pull request #5 from fredmanglis/testing | Pjotr Prins | |
| Testing | |||
| 2018-03-18 | Initialise mapping tests | Muriithi Frederick Muriuki | |
| * Add mapping tests, and build the first of the tests. | |||
| 2018-03-18 | Move import to the top of the page. | Muriithi Frederick Muriuki | |
| * Mainly to tell the dependencies easily. | |||
| 2018-03-18 | Check that key exists before using it | Muriithi Frederick Muriuki | |
| * Ensure the key exists in the json object/dictionary, before trying to use it to retrieve a value. | |||
| 2018-03-16 | Just undoing tabulator changes so I can push other changes | zsloan | |
| 2018-03-15 | Changed appearance of mapping and correlation options on trait page | zsloan | |
| Fixed issue where changed sample values were not passed to qtlreaper mapping ("Interval Mapping") Loading factors and their plot are hidden in situations where there's some error with calculating principal components Added GEMMA description and changed order of descriptions for mapping options on trait page | |||
| 2018-03-14 | Add tests for main web functionality | Muriithi Frederick Muriuki | |
| 2018-03-12 | Add tests to check links. | Muriithi Frederick Muriuki | |
| 2018-03-09 | Add link_checker module | Muriithi Frederick Muriuki | |
| * Add the module that will hold the code to test the links on the system. | |||
| 2018-03-09 | Use argparse to handle arguments | Muriithi Frederick Muriuki | |
| * Use argparse to handle commandline arguments. * Create initial layout of how the code might end up - lots of the code is currently commented out. | |||
| 2018-03-02 | Added option to display selected covariates for GEMMA mapping | zsloan | |
| Changed layout/appearance of mapping options Partially fixed issue with deleting collections Changes to correlation table still in progress; having trouble getting tabulator to load JSON | |||
| 2018-02-26 | Merge /home/lei/gene into testing | zsloan | |
| 2018-02-26 | Committing some in-progress changes related to loading correlation page from ↵ | zsloan | |
| JSON | |||
| 2018-02-23 | Add tests to check that the UI is setup correctly | Muriithi Frederick Muriuki | |
| * Check that the links for OAuth2 logins via ORCID and GitHub are setup correctly. | |||
| 2018-02-23 | Provide connections to elasticsearch | Muriithi Frederick Muriuki | |
| * Provide connections to elasticsearch at various points in the code. These oversight was caught while running tests. | |||
| 2018-02-23 | Add new tests for orcid logins | Muriithi Frederick Muriuki | |
| 2018-02-23 | Add new test for github logins | Muriithi Frederick Muriuki | |
| 2018-02-23 | Remove failing code | Muriithi Frederick Muriuki | |
| * With the parameterized module, the testcase cannot be run independently at this time. | |||
| 2018-02-23 | update corr scatterplot interface | Lei Yan | |
| 2018-02-21 | Simplify test. Check for content, rather than url | Muriithi Frederick Muriuki | |
| * The test functions were very similar, so this commit refactors out the common test code to a single method, and passes in the data to the test using the parameterized package. * Check that the page content after a login attempt is the expected content, rather than checking the url. | |||
| 2018-02-21 | Fix assumption of existing collection | Muriithi Frederick Muriuki | |
| * When logging in, if a user selects "Import existing collections", the system would throw an exception, since Redis would return a NoneType, which would then be accessed by json.loads(), which doesn't seem to know how to process that. This fixes that, by providing a string representing an empty json array ("[]"), in place of the NoneType. | |||
| 2018-02-19 | Add more login tests. | Muriithi Frederick Muriuki | |
| 2018-02-19 | Add a runner for all integration tests. | Muriithi Frederick Muriuki | |
| 2018-02-19 | Add test for local login | Muriithi Frederick Muriuki | |
| * Add an integration test to test that the login process for users registered locally to genenetwork2 works as expected. | |||
| 2018-02-19 | Create parametrized superclass for tests | Muriithi Frederick Muriuki | |
| * Since the tests require that some parameters be provided while running the tests, create a class that helps abstract away the details of retrieving and setting the expected parameters. | |||
| 2018-02-19 | Rename file and move common code | Muriithi Frederick Muriuki | |
| * Rename the file to make it an importable module * Refactor the test to move common code out to a super class. | |||
| 2018-02-16 | Add registration test | Muriithi Frederick Muriuki | |
| * Add integration test to check the registration process. | |||
| 2018-02-16 | Merge branch 'pjotrp-gn-testing-es' into testing | Muriithi Frederick Muriuki | |
| 2018-02-15 | Requests added | Pjotr Prins | |
| 2018-02-15 | Added unittest example | Pjotr Prins | |
| 2018-02-15 | Fixing authentication stuff so it uses parameters properly. Also no ↵ | Pjotr Prins | |
| PYTHONPATH needed as it is now in the Guix build. | |||
| 2018-02-15 | Fix conflict | Pjotr Prins | |
| 2018-02-14 | Added empty collection error page to git, since it wasn't on production | zsloan | |
| 2018-02-13 | Resolved conflict | zsloan | |
| 2018-02-13 | Just committing very minor change to correlation table so I can pull other ↵ | zsloan | |
| changes | |||
| 2018-02-13 | Merge pull request #285 from pjotrp/testing | zsloan | |
| @zsloan: we should introduce full parameter checking and sensible defaults | |||
| 2018-02-13 | Add tests for Registration process. | Muriithi Frederick Muriuki | |
| 2018-02-13 | Update module to make it more testable | Muriithi Frederick Muriuki | |
| * Update functions to make them more testable. * Update code using updated functions. | |||
| 2018-02-13 | @zsloan: we should introduce full parameter checking and sensible defaults ↵ | Pjotr Prins | |
| for every page we work on. It will help bug tracking. Probably fixes #279 | |||
| 2018-02-12 | Changed code parsing GEMMA output to fix issue where it wasn't getting the ↵ | zsloan | |
| correct p-values | |||
| 2018-02-12 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan | |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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