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2021-10-22Replace hardcoded GN3 RQTL URLzsloan
2021-10-22Added proxy and local GN3 URLs in tools.py (which should be set in the ↵zsloan
settings file)
2021-10-22Add NSF awardPjotr Prins
2021-10-22Updated funding and creditsPjotr Prins
2021-10-22Possible fix for the weird inconsistent correlation key error for strain ↵zsloan
BXD073bxBXD077F1
2021-10-19Fixes issue with the bytes encoding being included in the string for ↵zsloan
ProbeSet trait descriptions on the search result page
2021-10-19Fixed some errors/logic for search results related to how the name/display ↵zsloan
name was being set
2021-10-19Fixed bug where the record ID for ProbeSet traits wasn't being pulled from ↵zsloan
the correct position in the query results
2021-10-19Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-10-19Fixed heatmap URL in view_collectionzsloan
2021-10-18Merge pull request #557 from zsloan/feature/remove_trait_creation_from_searchzsloan
Feature/remove trait creation from search
2021-10-18Fixed the way group code was used when setting phenotype trait display name ↵zsloan
+ prevent encoding error with try/except
2021-10-18Changed table width to 100% for non-Geno datasets, since it can always be ↵zsloan
manually resized
2021-10-18Replace this_trait.dataset.type with just self.dataset.typezsloan
2021-10-18Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵zsloan
feature/remove_trait_creation_from_search
2021-10-18Merge pull request #562 from zsloan/feature/add_resizeable_columnszsloan
Add Resizeable Table Columns
2021-10-14Merge pull request #605 from genenetwork/clustered_heatmapsBonfaceKilz
Clustered heatmaps
2021-10-14Merge pull request #607 from Alexanderlacuna/feature/integrate-gn3-wgcnaBonfaceKilz
test template for gn3 wgcna
2021-10-13Fix issue where score_type being set wrong caused an error when exporting ↵zsloan
mapping results (a while back it was changed from LOD to -logP)
2021-10-13Add some documentation for generating heatmapsFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Add some documentation on generating the heatmaps, that would be useful for the end user.
2021-10-13Update the action button textFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Update the action button text to more closely correspond to the action that the button triggers.
2021-10-13resolve merge conflictAlexander Kabui
2021-10-13disable heatmap imageAlexander Kabui
2021-10-12Merge branch 'testing' into feature/add_resizeable_columnszsloan
2021-10-12Fixed export_mapping_results test in test_run_mapping.pyzsloan
2021-10-12Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵Frederick Muriuki Muriithi
clustered_heatmaps
2021-10-10replace form input with select optionsAlexander Kabui
2021-10-10remove commented code and debug statementsAlexander Kabui
2021-10-10ui:show phenotypes pageAlexander Kabui
2021-10-10minor fixes for uiAlexander Kabui
2021-10-10modifications for wgcna form pageAlexander Kabui
2021-10-10enable wgcna in gn2 toolbarAlexander Kabui
2021-10-10pep8 formatting && remove unused functionsAlexander Kabui
2021-10-10call run_wgcna in views && render test templateAlexander Kabui
2021-10-10pep8 formatting fix for parsing response dataAlexander Kabui
2021-10-09add function to call wgcna apiAlexander Kabui
2021-10-09add function to process trait sample dataAlexander Kabui
2021-10-09function to fetch trait dataAlexander Kabui
2021-10-09add function to process image dataAlexander Kabui
2021-10-09unittest for processing wgcna outputAlexander Kabui
2021-10-09add function to process gn3 wgcna outputAlexander Kabui
2021-10-08Fixed some issues with scale and score_type in mapping export + include ↵zsloan
mapping method in export filename
2021-10-08Fix issue where outliers weren't being highlighted for rows drawn by ↵zsloan
Scroller (so all rows beyond a certain point)
2021-10-08Fixed the sort to account for both chr and pos in a kind of hack-y way + ↵zsloan
added some comments + changed EOL to LF because the file suddenly started including EOL characters
2021-10-08Adding convert_dol_genotypes.py to scripts; everything is hard-coded in it ↵zsloan
since I was only writing it to generate a specific file and it probably won't be re-used
2021-10-06scripts: resource: Add option for specifying a groups uuidBonfaceKilz
2021-10-06scripts: group: Replace args.group_name with data["field"]BonfaceKilz
2021-10-06scripts: group: Update docstrings for "create_group_data"BonfaceKilz
2021-10-06scripts: group: Break up long lineBonfaceKilz
2021-10-06scripts: group: Fix indentationBonfaceKilz
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