| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2018-02-23 | Remove failing code | Muriithi Frederick Muriuki | |
| * With the parameterized module, the testcase cannot be run independently at this time. | |||
| 2018-02-23 | update corr scatterplot interface | Lei Yan | |
| 2018-02-21 | Simplify test. Check for content, rather than url | Muriithi Frederick Muriuki | |
| * The test functions were very similar, so this commit refactors out the common test code to a single method, and passes in the data to the test using the parameterized package. * Check that the page content after a login attempt is the expected content, rather than checking the url. | |||
| 2018-02-21 | Fix assumption of existing collection | Muriithi Frederick Muriuki | |
| * When logging in, if a user selects "Import existing collections", the system would throw an exception, since Redis would return a NoneType, which would then be accessed by json.loads(), which doesn't seem to know how to process that. This fixes that, by providing a string representing an empty json array ("[]"), in place of the NoneType. | |||
| 2018-02-19 | Add more login tests. | Muriithi Frederick Muriuki | |
| 2018-02-19 | Add a runner for all integration tests. | Muriithi Frederick Muriuki | |
| 2018-02-19 | Add test for local login | Muriithi Frederick Muriuki | |
| * Add an integration test to test that the login process for users registered locally to genenetwork2 works as expected. | |||
| 2018-02-19 | Create parametrized superclass for tests | Muriithi Frederick Muriuki | |
| * Since the tests require that some parameters be provided while running the tests, create a class that helps abstract away the details of retrieving and setting the expected parameters. | |||
| 2018-02-19 | Rename file and move common code | Muriithi Frederick Muriuki | |
| * Rename the file to make it an importable module * Refactor the test to move common code out to a super class. | |||
| 2018-02-16 | Add registration test | Muriithi Frederick Muriuki | |
| * Add integration test to check the registration process. | |||
| 2018-02-16 | Merge branch 'pjotrp-gn-testing-es' into testing | Muriithi Frederick Muriuki | |
| 2018-02-15 | Requests added | Pjotr Prins | |
| 2018-02-15 | Added unittest example | Pjotr Prins | |
| 2018-02-15 | Fixing authentication stuff so it uses parameters properly. Also no ↵ | Pjotr Prins | |
| PYTHONPATH needed as it is now in the Guix build. | |||
| 2018-02-15 | Fix conflict | Pjotr Prins | |
| 2018-02-14 | Added empty collection error page to git, since it wasn't on production | zsloan | |
| 2018-02-13 | Resolved conflict | zsloan | |
| 2018-02-13 | Just committing very minor change to correlation table so I can pull other ↵ | zsloan | |
| changes | |||
| 2018-02-13 | Merge pull request #285 from pjotrp/testing | zsloan | |
| @zsloan: we should introduce full parameter checking and sensible defaults | |||
| 2018-02-13 | Add tests for Registration process. | Muriithi Frederick Muriuki | |
| 2018-02-13 | Update module to make it more testable | Muriithi Frederick Muriuki | |
| * Update functions to make them more testable. * Update code using updated functions. | |||
| 2018-02-13 | @zsloan: we should introduce full parameter checking and sensible defaults ↵ | Pjotr Prins | |
| for every page we work on. It will help bug tracking. Probably fixes #279 | |||
| 2018-02-12 | Changed code parsing GEMMA output to fix issue where it wasn't getting the ↵ | zsloan | |
| correct p-values | |||
| 2018-02-12 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan | |
| 2018-02-12 | Quick parallel correlation should work, though I'm not sure why the code ↵ | zsloan | |
| suddenly decided to start running it when it wasn't in the past. Switched correlation table to tabulator | |||
| 2018-02-12 | Merge pull request #277 from pjotrp/gn-production | zsloan | |
| Gn production | |||
| 2018-02-11 | Added gunicorn pid so we can not run twice | Pjotr Prins | |
| 2018-02-11 | Using eventlet workers | zsloan | |
| 2018-02-10 | Fix env variable $GEMMA_WRAPPER_COMMAND | Pjotr Prins | |
| 2018-02-10 | Fixing GEMMA LOCO | Pjotr Prins | |
| 2018-02-10 | Fixed finding PATHs - one return statement! | Pjotr Prins | |
| 2018-02-10 | Check for bimbam path and bail out if it is missing | Pjotr Prins | |
| 2018-02-09 | Check elasticsearch at point of use | Muriithi Frederick Muriuki | |
| * Instead of checking for the state of elasticsearch at startup, check the state at the moment the user requests a feature that depends on elasticsearch. This reduces the chances that the user is dropped onto an exception page when elasticsearch server goes down. | |||
| 2018-02-09 | Add check for elasticsearch | Muriithi Frederick Muriuki | |
| * Add some extra checks to ensure that elasticsearch is running before presenting the UI to the user. | |||
| 2018-02-05 | Add code to allow user to change password | Muriithi Frederick Muriuki | |
| * After the email is sent to the user, there is need to provide a way for the user to actually change their password, and have the results saved. | |||
| 2018-02-05 | Refactor common items to more generic methods. | Muriithi Frederick Muriuki | |
| * Refactor code that can be used in more than one place to a more generic method/function that's called by other methods | |||
| 2018-02-05 | Send emails for forgotten passwords | Muriithi Frederick Muriuki | |
| * Update the code so that it sends out emails for the "forgot password" feature. | |||
| 2018-02-05 | Add SMTP configuration variables | Muriithi Frederick Muriuki | |
| * Add configuration variables to enable the system connect to the configured SMTP server to send out emails. | |||
| 2018-02-05 | Check each part of the PYTHONPATH | Muriithi Frederick Muriuki | |
| * PYTHONPATH may be composed of multiple locations in the filesystem, thus the need to test that each location exists and is a directory. | |||
| 2018-02-05 | Merge remote-tracking branch 'origin/testing' into testing | Muriithi Frederick Muriuki | |
| 2018-01-31 | Merge pull request #275 from pjotrp/pjotr | zsloan | |
| Added cli swith and set timeout to 3 minutes for gunicorn-dev mode | |||
| 2018-01-31 | Startup: longer timeout for gunicorn-dev mode | Pjotr Prins | |
| 2018-01-31 | Startup: added -cli option | Pjotr Prins | |
| 2018-01-30 | Merge pull request #274 from pjotrp/pjotr | zsloan | |
| Add gunicorn support | |||
| 2018-01-30 | gunicorn dev and prod modes added | Pjotr Prins | |
| 2018-01-30 | Fail safely if elasticsearch is down or unconfigured | Muriithi Frederick Muriuki | |
| * If elasticsearch server is down, or the configuration variables are not provided at startup or in a configuration file, then do not allow the system to simply crash, but instead, inform the user that they cannot use the services that depend on elasticsearch to be running. | |||
| 2018-01-30 | Set to None if no value provided | Muriithi Frederick Muriuki | |
| * Add a method to set the configuration variables to None if the configuration values are not provided at startup or in the configuration files. The system already checks for these values, and if they are absent, it simply fails to display the OAuth service as available for use to login. | |||
| 2018-01-29 | Fixed gunicorn example | Pjotr Prins | |
| 2018-01-29 | Gunicorn works | Pjotr Prins | |
| 2018-01-29 | startup script: adapting for gunicorn | Pjotr Prins | |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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