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2021-10-06scripts: group: Update docstrings for "create_group_data"BonfaceKilz
2021-10-06scripts: group: Break up long lineBonfaceKilz
2021-10-06scripts: group: Fix indentationBonfaceKilz
2021-10-06workflows: main.yml: Disable link checkingBonfaceKilz
2021-10-06Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵Frederick Muriuki Muriithi
clustered_heatmaps
2021-10-06scripts: group: Remove empty `""` value for data.getBonfaceKilz
data.get("field") will default to None if there is no value; and None is falsy.
2021-10-06scripts: group: Remove unused importBonfaceKilz
2021-10-06scripts: group: Use a unique key to identify a groupBonfaceKilz
2021-10-06display imagesAlexander Kabui
2021-10-06Enable selection of heatmap orientationFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Provide the user with the UI elements to enable them select the orientation of the heatmap that will be produced.
2021-10-06doc: docker-container.org: Remove python2 gn2 docker set-up commandBonfaceKilz
2021-10-06tests: test_run_mapping: Add missing "name" attribute to testsBonfaceKilz
2021-10-06tests: test_run_mapping: Add missing callsBonfaceKilz
After adding the missing attribute to "self.trait", we need to also need to update some missing calls.
2021-10-06tests: test_run_mapping: Fix failing assert when getting perm strataBonfaceKilz
2021-10-06tests: test_run_mapping: Add missing attribute to "self.trait"BonfaceKilz
2021-10-06tests: test_run_mapping: Add missing positional argument "vals_hash"BonfaceKilz
2021-10-06add datatable for eigengenesAlexander Kabui
2021-10-05Merge branch 'testing' into feature/add_resizeable_columnszsloan
2021-10-05code format for wgcna results fileAlexander Kabui
2021-10-05js formattingAlexander Kabui
2021-10-05move xterm code to setupAlexander Kabui
2021-10-05work on wgcna_setup formAlexander Kabui
2021-10-04Moved REDIS_CONN back into if __name__ == '__main__' since it doesn't need ↵zsloan
to be globally accessed anymore (I think I intiially moved it because I was calling it in create_group_data, but that ended up being unnecessary
2021-10-04Changed the group.py script to replace user e-mails with IDs and to include ↵zsloan
id, name, changed_timestamp, and created_timestamp in group details
2021-10-04Changed get_user_groups to pull both the ID and details in the for loop from ↵zsloan
group_list by using group_list.items()
2021-10-04Add group link for user member groupszsloan
2021-10-04scripts: group.py: Modify exit message when displaying updated dataBonfaceKilz
2021-10-04scripts: group.py: Remove "glom" dependencyBonfaceKilz
2021-10-04Decode redis response by defaultBonfaceKilz
2021-10-04Modify resource editing script to enable data backups & restorationBonfaceKilz
2021-10-04wqflask: resource_manager: Remove loggerBonfaceKilz
2021-10-04Add script that adds "editors" group to all resources in RedisBonfaceKilz
2021-10-04Add script for creating/ updating groups during authorisationBonfaceKilz
2021-10-04Remove "_scripts.html" and all it's referencesBonfaceKilz
2021-10-04new_security: login_user.html: Delete commented out blockBonfaceKilz
2021-10-04Replace hard-coded e-mails with gn-proxy queriesBonfaceKilz
* wqflask/wqflask/decorators.py (edit_access_required.wrap): Query the proxy to see the access rights of a given user.
2021-10-04Rename "admin_login_required" to "edit_access_required"BonfaceKilz
2021-10-01add xterm web terminalAlexander Kabui
2021-09-29test template for gn3 wgcnaAlexander Kabui
2021-09-27Apply pep-8 formattingBonfaceKilz
2021-09-27Remove variable-- named after a python keyword-- called "list"BonfaceKilz
2021-09-27Remove lengthy stack trace for 404, 400, 408 status codesBonfaceKilz
The stack trace causes the log file to grow into unmanageable sizes over time.
2021-09-25Add progress indicator. Handle errors.Frederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * Add a progress indicator to show the user that there is some progress happening, so that they can wait. Add a function to handle any errors that arise.
2021-09-25Remove hard-coded URL; use configured URLFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * etc/default_settings.py: remove duplicate configuration variable * wqflask/wqflask/collect.py: use the configured url for the API server Use the configured URL rather that the hard-coded URL that was used for testing out the clustered heatmap generation.
2021-09-23Clear any existing image on subsequent clicksFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * If the user clicks on the "Clustered Heatmap" button, the system should remove any previously existing clustered heatmap image and replace it with the new image.
2021-09-23Move the heatmap display area to before the tableFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * Move the heatmap area to before the data table, so that once the heatmap is generated, it shows up before the table, and the user is able to see what happened.
2021-09-22Removed the Control for (marker) option from R/qtl for now since Danny ↵zsloan
mentioned it isn't working correctly
2021-09-22Fixed issue where the control marker parameter was being passed incorrectly ↵zsloan
to GN3 (should be just 'control' but was previously passed as 'control_marker')
2021-09-22Only show most search page options if results exist; otherwise provide a ↵zsloan
link back to the home page
2021-09-22Added type='button' to the Delete Collection button within collections/view, ↵zsloan
since without it it attempts to submit the form encapsulating the button (export in this case)
generated by cgit v1.2.3 (git 2.44.0) at 2024-12-11 17:56:35 +0000