| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2021-10-09 | add function to process gn3 wgcna output | Alexander Kabui | |
| 2021-10-08 | Fixed some issues with scale and score_type in mapping export + include ↵ | zsloan | |
| mapping method in export filename | |||
| 2021-10-08 | Fix issue where outliers weren't being highlighted for rows drawn by ↵ | zsloan | |
| Scroller (so all rows beyond a certain point) | |||
| 2021-10-08 | Fixed the sort to account for both chr and pos in a kind of hack-y way + ↵ | zsloan | |
| added some comments + changed EOL to LF because the file suddenly started including EOL characters | |||
| 2021-10-08 | Adding convert_dol_genotypes.py to scripts; everything is hard-coded in it ↵ | zsloan | |
| since I was only writing it to generate a specific file and it probably won't be re-used | |||
| 2021-10-06 | scripts: resource: Add option for specifying a groups uuid | BonfaceKilz | |
| 2021-10-06 | scripts: group: Replace args.group_name with data["field"] | BonfaceKilz | |
| 2021-10-06 | scripts: group: Update docstrings for "create_group_data" | BonfaceKilz | |
| 2021-10-06 | scripts: group: Break up long line | BonfaceKilz | |
| 2021-10-06 | scripts: group: Fix indentation | BonfaceKilz | |
| 2021-10-06 | workflows: main.yml: Disable link checking | BonfaceKilz | |
| 2021-10-06 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵ | Frederick Muriuki Muriithi | |
| clustered_heatmaps | |||
| 2021-10-06 | scripts: group: Remove empty `""` value for data.get | BonfaceKilz | |
| data.get("field") will default to None if there is no value; and None is falsy. | |||
| 2021-10-06 | scripts: group: Remove unused import | BonfaceKilz | |
| 2021-10-06 | scripts: group: Use a unique key to identify a group | BonfaceKilz | |
| 2021-10-06 | display images | Alexander Kabui | |
| 2021-10-06 | Enable selection of heatmap orientation | Frederick Muriuki Muriithi | |
| Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Provide the user with the UI elements to enable them select the orientation of the heatmap that will be produced. | |||
| 2021-10-06 | doc: docker-container.org: Remove python2 gn2 docker set-up command | BonfaceKilz | |
| 2021-10-06 | tests: test_run_mapping: Add missing "name" attribute to tests | BonfaceKilz | |
| 2021-10-06 | tests: test_run_mapping: Add missing calls | BonfaceKilz | |
| After adding the missing attribute to "self.trait", we need to also need to update some missing calls. | |||
| 2021-10-06 | tests: test_run_mapping: Fix failing assert when getting perm strata | BonfaceKilz | |
| 2021-10-06 | tests: test_run_mapping: Add missing attribute to "self.trait" | BonfaceKilz | |
| 2021-10-06 | tests: test_run_mapping: Add missing positional argument "vals_hash" | BonfaceKilz | |
| 2021-10-06 | add datatable for eigengenes | Alexander Kabui | |
| 2021-10-05 | Merge branch 'testing' into feature/add_resizeable_columns | zsloan | |
| 2021-10-05 | code format for wgcna results file | Alexander Kabui | |
| 2021-10-05 | js formatting | Alexander Kabui | |
| 2021-10-05 | move xterm code to setup | Alexander Kabui | |
| 2021-10-05 | work on wgcna_setup form | Alexander Kabui | |
| 2021-10-04 | Moved REDIS_CONN back into if __name__ == '__main__' since it doesn't need ↵ | zsloan | |
| to be globally accessed anymore (I think I intiially moved it because I was calling it in create_group_data, but that ended up being unnecessary | |||
| 2021-10-04 | Changed the group.py script to replace user e-mails with IDs and to include ↵ | zsloan | |
| id, name, changed_timestamp, and created_timestamp in group details | |||
| 2021-10-04 | Changed get_user_groups to pull both the ID and details in the for loop from ↵ | zsloan | |
| group_list by using group_list.items() | |||
| 2021-10-04 | Add group link for user member groups | zsloan | |
| 2021-10-04 | scripts: group.py: Modify exit message when displaying updated data | BonfaceKilz | |
| 2021-10-04 | scripts: group.py: Remove "glom" dependency | BonfaceKilz | |
| 2021-10-04 | Decode redis response by default | BonfaceKilz | |
| 2021-10-04 | Modify resource editing script to enable data backups & restoration | BonfaceKilz | |
| 2021-10-04 | wqflask: resource_manager: Remove logger | BonfaceKilz | |
| 2021-10-04 | Add script that adds "editors" group to all resources in Redis | BonfaceKilz | |
| 2021-10-04 | Add script for creating/ updating groups during authorisation | BonfaceKilz | |
| 2021-10-04 | Remove "_scripts.html" and all it's references | BonfaceKilz | |
| 2021-10-04 | new_security: login_user.html: Delete commented out block | BonfaceKilz | |
| 2021-10-04 | Replace hard-coded e-mails with gn-proxy queries | BonfaceKilz | |
| * wqflask/wqflask/decorators.py (edit_access_required.wrap): Query the proxy to see the access rights of a given user. | |||
| 2021-10-04 | Rename "admin_login_required" to "edit_access_required" | BonfaceKilz | |
| 2021-10-01 | add xterm web terminal | Alexander Kabui | |
| 2021-09-29 | test template for gn3 wgcna | Alexander Kabui | |
| 2021-09-27 | Apply pep-8 formatting | BonfaceKilz | |
| 2021-09-27 | Remove variable-- named after a python keyword-- called "list" | BonfaceKilz | |
| 2021-09-27 | Remove lengthy stack trace for 404, 400, 408 status codes | BonfaceKilz | |
| The stack trace causes the log file to grow into unmanageable sizes over time. | |||
| 2021-09-25 | Add progress indicator. Handle errors. | Frederick Muriuki Muriithi | |
| Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi * Add a progress indicator to show the user that there is some progress happening, so that they can wait. Add a function to handle any errors that arise. | |||
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