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2021-10-10ui:show phenotypes pageAlexander Kabui
2021-10-10minor fixes for uiAlexander Kabui
2021-10-10modifications for wgcna form pageAlexander Kabui
2021-10-10enable wgcna in gn2 toolbarAlexander Kabui
2021-10-10pep8 formatting && remove unused functionsAlexander Kabui
2021-10-10call run_wgcna in views && render test templateAlexander Kabui
2021-10-10pep8 formatting fix for parsing response dataAlexander Kabui
2021-10-09add function to call wgcna apiAlexander Kabui
2021-10-09add function to process trait sample dataAlexander Kabui
2021-10-09function to fetch trait dataAlexander Kabui
2021-10-09add function to process image dataAlexander Kabui
2021-10-09unittest for processing wgcna outputAlexander Kabui
2021-10-09add function to process gn3 wgcna outputAlexander Kabui
2021-10-08Fixed some issues with scale and score_type in mapping export + include ↵zsloan
mapping method in export filename
2021-10-08Fix issue where outliers weren't being highlighted for rows drawn by ↵zsloan
Scroller (so all rows beyond a certain point)
2021-10-08Fixed the sort to account for both chr and pos in a kind of hack-y way + ↵zsloan
added some comments + changed EOL to LF because the file suddenly started including EOL characters
2021-10-08Adding convert_dol_genotypes.py to scripts; everything is hard-coded in it ↵zsloan
since I was only writing it to generate a specific file and it probably won't be re-used
2021-10-06scripts: resource: Add option for specifying a groups uuidBonfaceKilz
2021-10-06scripts: group: Replace args.group_name with data["field"]BonfaceKilz
2021-10-06scripts: group: Update docstrings for "create_group_data"BonfaceKilz
2021-10-06scripts: group: Break up long lineBonfaceKilz
2021-10-06scripts: group: Fix indentationBonfaceKilz
2021-10-06workflows: main.yml: Disable link checkingBonfaceKilz
2021-10-06Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵Frederick Muriuki Muriithi
clustered_heatmaps
2021-10-06scripts: group: Remove empty `""` value for data.getBonfaceKilz
data.get("field") will default to None if there is no value; and None is falsy.
2021-10-06scripts: group: Remove unused importBonfaceKilz
2021-10-06scripts: group: Use a unique key to identify a groupBonfaceKilz
2021-10-06display imagesAlexander Kabui
2021-10-06Enable selection of heatmap orientationFrederick Muriuki Muriithi
Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Provide the user with the UI elements to enable them select the orientation of the heatmap that will be produced.
2021-10-06doc: docker-container.org: Remove python2 gn2 docker set-up commandBonfaceKilz
2021-10-06tests: test_run_mapping: Add missing "name" attribute to testsBonfaceKilz
2021-10-06tests: test_run_mapping: Add missing callsBonfaceKilz
After adding the missing attribute to "self.trait", we need to also need to update some missing calls.
2021-10-06tests: test_run_mapping: Fix failing assert when getting perm strataBonfaceKilz
2021-10-06tests: test_run_mapping: Add missing attribute to "self.trait"BonfaceKilz
2021-10-06tests: test_run_mapping: Add missing positional argument "vals_hash"BonfaceKilz
2021-10-06add datatable for eigengenesAlexander Kabui
2021-10-05Merge branch 'testing' into feature/add_resizeable_columnszsloan
2021-10-05code format for wgcna results fileAlexander Kabui
2021-10-05js formattingAlexander Kabui
2021-10-05move xterm code to setupAlexander Kabui
2021-10-05work on wgcna_setup formAlexander Kabui
2021-10-04Moved REDIS_CONN back into if __name__ == '__main__' since it doesn't need ↵zsloan
to be globally accessed anymore (I think I intiially moved it because I was calling it in create_group_data, but that ended up being unnecessary
2021-10-04Changed the group.py script to replace user e-mails with IDs and to include ↵zsloan
id, name, changed_timestamp, and created_timestamp in group details
2021-10-04Changed get_user_groups to pull both the ID and details in the for loop from ↵zsloan
group_list by using group_list.items()
2021-10-04Add group link for user member groupszsloan
2021-10-04scripts: group.py: Modify exit message when displaying updated dataBonfaceKilz
2021-10-04scripts: group.py: Remove "glom" dependencyBonfaceKilz
2021-10-04Decode redis response by defaultBonfaceKilz
2021-10-04Modify resource editing script to enable data backups & restorationBonfaceKilz
2021-10-04wqflask: resource_manager: Remove loggerBonfaceKilz
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