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2021-06-28Added doc for creating guix profile, written by Bonfacezsloan
2021-06-21Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-06-21Merge pull request #588 from zsloan/feature/add_scroller_to_mapping_resultszsloan
Feature/add scroller to mapping results
2021-06-18Changed limit from 2000 markers to 10000 markers for the number to show in ↵zsloan
mapping results table
2021-06-18Added Scroller to mapping results tablezsloan
2021-06-18Re-enable bicor as an option in the trait page templateezsloan
2021-06-18Reenable PCA for correlation matrixzsloan
2021-06-18Re-enable bicor for correlations and fix issue where ro.Vector needed to be ↵zsloan
changed to ro.FloatVector
2021-06-17The listserv link was marked as broken but is working, so I made it a link ↵zsloan
again, but the IRC channel link is broken so I marked it as broken
2021-06-17UCSC Genome Browser link was marked as a broken link, but it apparently ↵zsloan
works now so I added it back as a link
2021-06-17Only show all-numerical attributes in the 'Filter samples by value' drop-downzsloan
2021-06-17Added function for getting list of attributes with all numerical values ↵zsloan
(that can be used with the 'Filter by value' feature)
2021-06-17Fixed issue that caused filtering by attribute values to not work if ↵zsloan
attribute values didn't exist for some samples
2021-06-17doc: rpy2-performance: Add a section exploring possible solutionsBonfaceKilz
2021-06-17docs: rpy2-performance: Indicate version of python-rpy2 being usedBonfaceKilz
2021-06-17doc: rpy2-performance: Replace begin_export with begin_srcBonfaceKilz
2021-06-17delete loggers and commentsAlexander Kabui
2021-06-17add f1list and parlist to primary_samplesAlexander Kabui
2021-06-17minor refactoringAlexander Kabui
2021-06-17sort sample name by sample_idsAlexander Kabui
2021-06-17remove print statementsAlexander Kabui
2021-06-17remove unused functions + minor fixesAlexander Kabui
2021-06-17minor fixAlexander Kabui
2021-06-17pep8 formattingAlexander Kabui
2021-06-17add query for fetching probeset dataAlexander Kabui
2021-06-17doc: Add results of investing rpy2 blocking issue in gn2BonfaceKilz
2021-06-17doc: rpy2-performance: Add a section exploring possible solutionsBonfaceKilz
2021-06-17docs: rpy2-performance: Indicate version of python-rpy2 being usedBonfaceKilz
2021-06-17doc: rpy2-performance: Replace begin_export with begin_srcBonfaceKilz
2021-06-17delete loggers and commentsAlexander Kabui
2021-06-17add f1list and parlist to primary_samplesAlexander Kabui
2021-06-17minor refactoringAlexander Kabui
2021-06-17sort sample name by sample_idsAlexander Kabui
2021-06-17remove print statementsAlexander Kabui
2021-06-17remove unused functions + minor fixesAlexander Kabui
2021-06-17minor fixAlexander Kabui
2021-06-17pep8 formattingAlexander Kabui
2021-06-17add query for fetching probeset dataAlexander Kabui
2021-06-17doc: Add results of investing rpy2 blocking issue in gn2BonfaceKilz
2021-06-16Fixed reference to target_trait['lrs_location'] that should have been ↵zsloan
target_trait['location'] for correlations against genotypes
2021-06-16Changed the function jsonable in trait.py to return a couple extra fields + ↵zsloan
take dataset as an optional argument (to avoid having to pointlessly create it)
2021-06-16Added function as_dict to data_set.py for situations where we don't want to ↵zsloan
pass around the whole dataset object
2021-06-16Changed set_other_template_vars to set_template_varszsloan
2021-06-16Rewrote show_corr_results.py to remove all code calculating correlations ↵zsloan
(that was moved to correlation_gn3_api.py, which will probably be renamed at some point) and only include the code generating the table JSON and some template variables
2021-06-16Added compute_all as parameter to compute_correlation and keyword arguments ↵zsloan
to docstring
2021-06-16Changed correlation page template to account for differences in the output ↵zsloan
returned from the GN3 API correlation code
2021-06-16Changed views.py to call the correlation code using the GN3 API + a function ↵zsloan
in show_corr_results for setting other template vars (might change this later)
2021-06-15Use markdown from Github for Newszsloan
2021-06-15Commented out Biweight Midcorrelation option on trait page, since it uses ↵zsloan
rpy2 and is currently disabled
2021-06-15Commented out WGCNA/CTL imports and endpoints since they import rpy2zsloan
generated by cgit v1.2.3 (git 2.44.0) at 2024-12-14 22:08:39 +0000