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2021-05-26doc: docker-container: Rename python3-genenetwork2 to genenetwork2BonfaceKilz
See: https://is.gd/gHJvhe
2021-05-26workflows: main: Use "bonfacekilz/genenetwork2:latest" docker imageBonfaceKilz
2021-05-26wqflask: views: Update comment when data is editedBonfaceKilz
For now the exact column that's edited isn't tracked.
2021-05-26wqflask: views: Import "fetchone" & "update" from "gn3.db"BonfaceKilz
2021-05-26Use @admin_login_required to only enable Rob to do edits to traitsBonfaceKilz
* wqflask/wqflask/decorators.py (admin_login_required): New decorator. * wqflask/wqflask/views.py (edit_trait): Use admin_login_required decorator.
2021-05-26wqflask: views: Add method that updates the traitBonfaceKilz
* wqflask/wqflask/views.py (update_trait): New function.
2021-05-26templates: edit_trait: Submit publish_xref dataBonfaceKilz
2021-05-26wqflask: views: Remove unused importsBonfaceKilz
2021-05-26wqflask: views: Make imports top-levelBonfaceKilz
2021-05-26templates: edit_trait: Make form functional(add ability to submit)BonfaceKilz
2021-05-26wqflask: views: Add edit_trait pageBonfaceKilz
Should add some some authentication logic to this later since it's not supposed to be accessible to everyone.
2021-05-26templates: edit_trait: Update edit btn to point to editing endpointBonfaceKilz
2021-05-26wqflask: views: Add extra endpoint to display individual trait editBonfaceKilz
* wqflask/wqflask/views.py (show_edit_trait_page): New function/ end-point.
2021-05-26templates: show_trait_details: Add an "[edit]" buttonBonfaceKilz
2021-05-26tests: test_gen_menu: Remove get_speciesBonfaceKilz
2021-05-26api: gen_menu: Replace get_species with get_all_species from gn3BonfaceKilz
* wqflask/wqflask/api/gen_menu.py (gen_dropdown_json): Use new `get_all_species` function. (get_species): Remove it.
2021-05-26db: webqtlDatabaseFunction: Remove commentBonfaceKilz
2021-05-26db: webqtlDatabaseFunction: Remove logger infoBonfaceKilz
2021-05-26wqflask: database: Replace one-line function with it's bodyBonfaceKilz
* wqflask/wqflask/database.py (init_db): Remove it.
2021-05-26templates: edit_trait: Add form for editing a dataset (WIP)BonfaceKilz
2021-05-25Fixed/shortened get_categorical_variables function and correctly pass them ↵zsloan
to show_trait template
2021-05-25Removed code that processes output files, since this functionality is moved ↵zsloan
to GN3
2021-05-22Fixed the mocked return_value for requests.post to fix broken testzsloan
2021-05-22Fixed a couple broken testszsloan
2021-05-22Rewrote test_rqtl_mapping.py, though haven't done tests for all functions yetzsloan
2021-05-21Removed a couple unused parameters for run_rqtlzsloan
2021-05-21run_rqtl now reads in permutation outputzsloan
2021-05-21locustfile: Add new load test for a simple test-caseBonfaceKilz
Load test fetching a single trait using Locust.
2021-05-20Re-implemented R/qtl to get the results from the GN3 APIzsloan
2021-05-18Last commit failed to correctly change Y-axis position; this should fix thatzsloan
2021-05-18Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-05-18Fixed issue that caused the sample values in the Haplotype Analyst to be off ↵zsloan
by 1
2021-05-17handle None for tissue input dataAlexander Kabui
2021-05-14Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-05-14Changed logic in SampleList to set num_cases_exists to False if all existing ↵zsloan
N are 1
2021-05-14Changed logic in has_num_cases to ignore N=1zsloan
2021-05-13pep8 formatting & delete commentsAlexander Kabui
2021-05-13integrate comute corr for top results in uiAlexander Kabui
2021-05-13add dataset and trait-name in ui templateAlexander Kabui
2021-05-13Fix load_phenotypes to run with GN2 latestArthur Centeno
2021-05-12Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2021-05-12Remove maxlength from value/SE input fields and base the width off of the ↵zsloan
max digits for that sample group's vals
2021-05-12Get max digits for each sample group's vals and create a function for ↵zsloan
getting a sample group's vals so the same logic isn't repeated several times
2021-05-11workflows: main.yml: Remove mysql service and update gn2 b/g taskBonfaceKilz
2021-05-11workflows: main.yml: Use mariadb as a serviceBonfaceKilz
2021-05-11workflows: main.yml: Set up gn2 before running the unit testsBonfaceKilz
2021-05-11workflows: main.yml: Use screen to run gn2BonfaceKilz
2021-05-11workflows: main.yml: Remove hard-coded pathBonfaceKilz
2021-05-11links_scraper: genelinks: Apply pep-8 formattingBonfaceKilz
2021-05-11links_scraper: genelinks: Remove unused importBonfaceKilz
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