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2016-04-27Test: get to trait pagePjotr Prins
2016-04-26Test: main page and first searchPjotr Prins
2016-04-26Interval mapping: fix font and image pathPjotr Prins
2016-04-26README: add environment paths infoPjotr Prins
2016-04-26Merging with Zach's latest branchPjotr Prins
2016-04-25Interval Analyst table mostly working, just need to work out a few more thingszsloan
2016-04-22Fixed issue where manhattan plot setting wasn't being carried over to single ↵zsloan
chromosome view for mapping results Removed a useless "if 1 == 1" line that was in marker_regression_gn1.py for testing.
2016-04-20Interval Mapping now correctly does interval mapping if Marker Regression ↵zsloan
isn't checked (it used to just "connect the dots" of the marker regression output) Changed "Manhattan Plot" label to "Marker Regr." to accurately reflect what the option does
2016-04-20Added borders to stats table in trait pagezsloan
2016-04-20Fix typoPjotr Prins
2016-04-20A few fixes to get the webserver running againPjotr Prins
2016-04-20Add filePjotr Prins
2016-04-20No longer ignore webqtlConfig.py - it should be genereic anywayPjotr Prins
2016-04-20Database informationPjotr Prins
2016-04-20README: point to gn-latest SHA valuesPjotr Prins
2016-04-20trasnform to transformDannyArends
2016-04-20Main READMEPjotr Prins
2016-04-20READMEPjotr Prins
2016-04-20Changed the file stem of generated pictures to CTLDannyArends
2016-04-20Adding small figures per trait, so that users can see CTL and QTL for each ↵DannyArends
individual phenotype
2016-04-20Adding parameters, and passing them to the CTL algorithmDannyArends
2016-04-20Working on the output template of CTLDannyArends
2016-04-20Updates to the CTL code adding the significant results to the result objectDannyArends
2016-04-20Cleaning code, adding commentsDannyArends
2016-04-20Adding the lineplot image to the outputDannyArends
2016-04-20Adding code to do initial CTL mapping (working on the BXD)DannyArends
2016-04-20Parsing the names of the individuals, and coding H as -999DannyArends
2016-04-20Minor changes to the CTL setup templateDannyArends
2016-04-20Using the geno parser to get/parse the genotypes for the datasetDannyArends
2016-04-20Adding the geno file parser from ZachDannyArends
2016-04-20Creating the analysis object and passing results to the results templateDannyArends
2016-04-20[PATCH 082/100] Testing passing information between the templatesDannyArends
2016-04-20Loading the library and mapping the scan functionDannyArends
2016-04-20Connecting the CTL analysis to the collection overview, by adding a buttonDannyArends
2016-04-20Adding initial file to perform CTL analysisDannyArends
2016-04-20[PATCH 078/100] Adding empty templates for CTL in GN2DannyArends
2016-04-20Cleaning up the WGCNA parameter input templateDannyArends
2016-04-20Docs: Database and GuixPjotr Prins
2016-04-20READMEPjotr Prins
2016-04-20READMEPjotr Prins
2016-04-20READMEPjotr Prins
2016-04-20READMEPjotr Prins
2016-04-20READMEPjotr Prins
2016-04-20READMEPjotr Prins
2016-04-20READMEPjotr Prins
2016-04-20READMEPjotr Prins
2016-04-20READMEPjotr Prins
2016-04-20READMEPjotr Prins
2016-04-20Remove outdated installation instructionsPjotr Prins
2016-04-20Removed outdated infoPjotr Prins
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