genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2012-10-19	Reindented genSelectDatasetJS as gen_select_dataset	Zachary Sloan

2012-10-18	Tried to make sense of existing code in select_dataset_menu.js/coffee, ↵	Zachary Sloan
	decided to make data structure reasonable and rewrite coffeescript
2012-10-18	Fixed spacing on coffeescript file	Zachary Sloan

2012-10-18	small changes	Zachary Sloan

2012-10-18	Converted selectDatasetMenu.js code to coffeescript as ↵	Zachary Sloan
	dataset_select_menu.coffee Copied the menu variables from selectDatasetMenu.js as dataset_select_items.js
2012-10-17	Fixed bug in an SQL query, changed search field id from "ORkeyword" to ↵	Zachary Sloan
	"search_terms"
2012-10-12	New home page beginning to look good	Zachary Sloan

2012-10-12	Continued work on new_index_page	Zachary Sloan

2012-10-12	Changed export code to use csv module	Zachary Sloan

2012-10-12	Finished getting trait data to export as a download prompt	Zachary Sloan
	Sam worked on the new index page model that uses bootstrap
2012-10-11	Worked with the export code and Sam worked on a redesigned index page	Zachary Sloan

2012-10-11	Got sample table data from the trait page sent to the export python code	Zachary Sloan

2012-10-10	Finished the remove samples by index validation	Zachary Sloan

2012-10-10	Got the validation code for remove samples by index mostly working	Zachary Sloan

2012-10-10	Changed the appearance of the trait data table options using bootstrap	Zachary Sloan

2012-10-10	Got a rudimentary version of the validation code for block samples by index ↵	Zachary Sloan
	completed
2012-10-10	Committing before removing some attempted validation code for the trait data ↵	Zachary Sloan
	page
2012-10-09	Used tidyp to improve/beautify index_page.html	Zachary Sloan

2012-10-09	Removed error related to LEFT in the html of index_page.html	Zachary Sloan

2012-10-09	Changed button and text field/dropdown appearance	Zachary Sloan

2012-10-09	Downloaded bootstrap and added it to base.html	Zachary Sloan
	Made a few more changes to search_results.py code
2012-10-09	Fixed parser for two regular (no parenthesis, =, or :) in a row	Zachary Sloan
	Began improving and rewriting portions of search_results.py
2012-10-09	Wrote coffeescript for the functions Hide No Value, Reset, and Hide Outliers	Zachary Sloan
	Added data attribute to input fields to store the original value for the Reset function Began replacing search_results.py parsing code with parser.py's parse function
2012-10-05	Parsing code can now split input into key (GO, LRS, etc), seperator (=, :)	Zachary Sloan
	and value (the numbers, etc to the right of the = or :
2012-10-05	Worked on rewriting search page parsing code.	Zachary Sloan
	Downloaded jquery validation code to use with the block index feature on the trait data page (as well as others in the future).
2012-10-05	Began changes to search result page python code	Zachary Sloan

2012-10-03	Finishing getting the exclude by attribute value function working	Zachary Sloan

2012-10-03	Changed css classes used in trait data table and wrote coffeescript code that	Zachary Sloan
	grabs the list of samples with an attribute value matching the value the user chose to exclude by. Added HTML5 data properties to table cells as data-column_name to use when excluding samples.
2012-10-02	Finished getting the dropdowns for the black samples by attribute value ↵	Zachary Sloan
	function working
2012-10-02	Renamed trait_data_and_analysis.html to show_trait.html, DataEditingPage.py ↵	Zachary Sloan
	to show_trait.py, and trait_data_and_analysis.coffee to show_trait.coffee
2012-09-28	Removed show_trait_page.py and moved relevant code over to ↵	Zachary Sloan
	DataEditingPage.py (though the user security stuff still needs to be moved over)
2012-09-28	Moved SampleList to its own file and eliminated the +/- and SE columns when ↵	Zachary Sloan
	there are no SE values
2012-09-28	Finished getting extra attributes to display correctly in the trait data table	Zachary Sloan

2012-09-27	Worked on getting attributes in the SampleList object to display data ↵	Zachary Sloan
	properly, changed SampleList from an object list to object
2012-09-26	Worked on implementing the extra attributes feature on the trait data page	Zachary Sloan

2012-09-25	Got trait data page running for human dataset, changed list of sample ↵	Zachary Sloan
	objects to a SampleList object
2012-09-25	Continued renaming variables/functions	Zachary Sloan

2012-09-25	Fixed issue with parent strains appearing twice and began replacing variable ↵	Zachary Sloan
	names (strain -> sample, for example)
2012-09-20	Further simplified stats table coffeescript code	Zachary Sloan

2012-09-20	Simplified stats table coffeescript code	Zachary Sloan

2012-09-20	Added headers to the trait data/analysis tables	Zachary Sloan

2012-09-20	Put the tables in the trait data/analysis page side by side	Zachary Sloan

2012-09-20	Created a class in coffeescript for stats and got several to display dynamically	Zachary Sloan

2012-09-19	Made pearson/spearman options disappear if lit correlation is chosen, began ↵	Zachary Sloan
	to address how to deal with Trait object in CorrelationPage
2012-09-19	Created correlation page template file, changed the form value name for ↵	Zachary Sloan
	pearson/spearman option, and put fd in CorrelationPage.py as self.__dict__
2012-09-14	Added standard deviation to stats table	Zachary Sloan

2012-09-14	Got median working in the javascript stats table	Zachary Sloan

2012-09-14	Got the dynamic javascript stats table working	Zachary Sloan

2012-09-13	Worked on improving readData and informativeStrains functions in ↵	Zachary Sloan
	webqtlFormData while trying to get correlation page running
2012-09-12	Worked towards correctly passing form data to correlation page and addressed ↵	Zachary Sloan
	various bugs that arose while doing so