| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2015-07-02 | Merge pull request #81 from lomereiter/fix_exporting | zsloan | |
| Fix SVG/PDF exporting | |||
| 2015-07-02 | fix typos | Artem Tarasov | |
| 2015-07-02 | fix #80 | Artem Tarasov | |
| 2015-07-02 | use button for returning to full view | Artem Tarasov | |
| 2015-07-02 | added CairoSVG to misc/requirements | Artem Tarasov | |
| 2015-07-01 | Needed to add a couple parenthesis for transLRS searches | zsloan | |
| 2015-07-01 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | zsloan | |
| 2015-07-01 | cis and trans LRS searches now work. Still need to get them working in ↵ | zsloan | |
| combined searches | |||
| 2015-06-29 | Merge pull request #72 from lomereiter/issue69 | zsloan | |
| Fixes #69 | |||
| 2015-06-29 | Merge pull request #77 from lomereiter/fix_sql | zsloan | |
| SQL security fixes | |||
| 2015-06-26 | Fixed minor bug where the static loading bar would remain after the mapping ↵ | zsloan | |
| results were displayed. | |||
| 2015-06-26 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | zsloan | |
| 2015-06-26 | Fixed bug where mapping results sometimes wouldn't display. This would occur | zsloan | |
| due to a chromosome (in this case the last) not having any markers. Improved the way plink gets its path/command to use a method similar to the one Pjotr used with pylmm. I'll also do this for the other mapping methods. Fixed issue where the Y axis would always say LOD score. It now says LRS for mapping methods that return LRS Switched interval mapping (qtl reaper) to use the marker_regression template and removed the interval_mapping template (since it's unnecessary) Some commented out changes remain (in show_trait_mapping_tools and create_lodchart) from when I was attempting to open the mapping results in a new page. I had resolved every issue but the mapping javascript (lod_chart) not being able to access js_data (which has all the result data; markers, p-values, etc). I'm pretty sure that this is because js_data was inserted into the html after the page was loaded while the chart code ran immediately. I experimented with adding a short timeout to the mapping javascript and data table javascript, but while it worked for the table it did not work for the mapping figure. I don't know why this is. | |||
| 2015-06-26 | Added license file | pjotrp | |
| 2015-06-22 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | zsloan | |
| Conflicts: wqflask/wqflask/templates/marker_regression.html | |||
| 2015-06-22 | Just a few minor changes before pulling Artem's fix to the mapping issue. | zsloan | |
| 2015-06-22 | Merge pull request #75 from lomereiter/fix_search | zsloan | |
| fix genotype search | |||
| 2015-06-22 | Merge pull request #76 from lomereiter/fix_mapping_results | zsloan | |
| fix mapping results loading | |||
| 2015-06-22 | escape docs query | Artem Tarasov | |
| 2015-06-22 | fixed a few potential security issues | Artem Tarasov | |
| 2015-06-21 | fix mapping results loading | Artem Tarasov | |
| 2015-06-20 | fix genotype search | Artem Tarasov | |
| 2015-06-18 | Fixed issue that prevented multiple mapping submissions without refreshing. ↵ | zsloan | |
| Also changed to where results open in new window instead of colorbox, though an issue remains where the css doesn't seem to be getting imported properly. | |||
| 2015-06-18 | removed unused function | Artem Tarasov | |
| 2015-06-18 | fix all_samples_ordered | Artem Tarasov | |
| move duplicated code into a method, handle the case of missing f1/f12 correctly | |||
| 2015-06-18 | add missing line to webqtlUtil | Artem Tarasov | |
| 2015-06-17 | Now you can expand/contract tabs on the trait page by click anywhere on the bar | zsloan | |
| 2015-06-16 | Finished adding all the extra tools/links below the trait details | zsloan | |
| 2015-06-05 | Added back in some of the options on the trait page; Add, Find, and Verify ↵ | zsloan | |
| now work. I'll get the other 4 working next. | |||
| 2015-06-04 | Fixed a minor issue that was causing position search to not work. | zsloan | |
| 2015-06-02 | Wildcards can now be appended to mRNA assay searches, but isn't working ↵ | zsloan | |
| correctly yet with phenotypes | |||
| 2015-06-02 | Added Panduka's Genotation tool link to the trait page, along with the Gene, ↵ | zsloan | |
| OMIM, and GenBank links | |||
| 2015-06-02 | Wildcard search should now work for Genotype searches | zsloan | |
| 2015-06-02 | Wildcard search (*) works for regular mRNA assay and phenotype searches and ↵ | zsloan | |
| fixed issue with black columns in correlation page | |||
| 2015-05-26 | Merge pull request #60 from lomereiter/pp | zsloan | |
| add missing file | |||
| 2015-05-26 | add missing file | Artem Tarasov | |
| 2015-05-26 | Merge pull request #58 from lomereiter/pp | zsloan | |
| Use NVD3 for bar chart and probability plot | |||
| 2015-05-26 | fix terminology | Artem Tarasov | |
| 2015-05-26 | use NVD3 for bar charts | Artem Tarasov | |
| added informative tooltips and error bars | |||
| 2015-05-23 | pp group selection | Artem Tarasov | |
| 2015-05-23 | fix group selection in blocking by index | Artem Tarasov | |
| 2015-05-23 | Fix trait grouping | Artem Tarasov | |
| 2015-05-23 | new probability plot (using NVD3 library) | Artem Tarasov | |
| * z scores are computed on the client side (using jStat library) * added Shapiro-Wilk test results | |||
| 2015-05-22 | Fixed issue where correlation didn't work for human traits (and probably ↵ | zsloan | |
| some others) | |||
| 2015-05-21 | Changed the digits for additive effect and megabases in the search results table | zsloan | |
| 2015-05-20 | Merge pull request #53 from lomereiter/bar_chart_improvements | zsloan | |
| Bar chart improvements | |||
| 2015-05-20 | revert database.py setup | Artem Tarasov | |
| 2015-05-20 | bar charts polished | Artem Tarasov | |
| * fixed bar chart width (two bars were invisible) * disabled basic stats update effects, if they are not visible * fix: unchecked samples were shown in charts (because attr('checked') was used instead of prop('checked')) * bar chart gets redrawn after checkbox changes * edit_data_change is also called when clicking buttons from the 'Block samples' panel * better bar chart transitions (use sample name as d3 key function) | |||
| 2015-05-19 | Fixed an issue causing position search to not work in a combined search. | zsloan | |
| 2015-05-19 | Fixed an issue that caused combined search to not work | zsloan | |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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