| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2019-08-02 | Fixed issue where zooming into chromosomes or range didn't work with reaper | zsloan | |
| 2019-08-02 | Fixed issue where resizing correlation page could make buttons get pushed down | zsloan | |
| 2019-08-02 | Added the gif for the loading screen | zsloan | |
| 2019-08-01 | Updated aliases to get all species aliases and remove duplicates | zsloan | |
| 2019-08-01 | Added wikidata aliases | zsloan | |
| Fixed year to not be a hyperlink when no pubmed id Fixed first column width so it doesn't go onto two lines for trait details | |||
| 2019-08-01 | Replaced loading bar with a gif that should work in Safari | zsloan | |
| 2019-08-01 | Made some more aesthetic changes to various pages and charts/figures | zsloan | |
| Added some information to the mapping loading page | |||
| 2019-07-31 | Fixed header to not have a fixed width, and added min-widths to many pages ↵ | zsloan | |
| to avoid them ever looking strange when the window's width is lowered Significnatly improved correlation matrix output Fixed issue where zooming into Mb ranges with GEMMA mapping output often showed no results; this fix is not ideal and is just a way to work around the results currently not being sorted correctly. Later I should fix the sorting | |||
| 2019-07-30 | Fixed correlation matrix width, colors, and padding | zsloan | |
| 2019-07-29 | Fixed minor issue with previous commit | zsloan | |
| 2019-07-29 | Forgot to remove an unused import | zsloan | |
| 2019-07-29 | Added Christian's RUST qtlreaper as an option | zsloan | |
| 2019-07-26 | Fixed the intercept line and added information to top of figure | zsloan | |
| 2019-07-26 | Scatterplots should have consistent decimal places for axes now | zsloan | |
| 2019-07-23 | Added change to automatically update datasets list using rest api instead of ↵ | zsloan | |
| json file Removed option to edit certain html pages, like news, policies, etc | |||
| 2019-07-19 | Fixed issue where chr in lower case didn't work for LRS term search | zsloan | |
| 2019-07-18 | Made change that should fix encoding issue, fingers crossed | zsloan | |
| 2019-07-17 | Hopefully fixed the issue with weird characters in search result descriptions | zsloan | |
| 2019-07-17 | Error page should now correctly appear when doing LOCO mapping with GEMMA ↵ | zsloan | |
| (if there's no appropriate genotype file) | |||
| 2019-07-15 | Fixed issue where qnorm values were wrong | zsloan | |
| Fixed issue where traits couldn't be highlighted or added to a collection from global search results Fixed issue where third party links threw an error for some traits on the trait page Fixed issue where clicking a row's link unhighlighted it | |||
| 2019-07-06 | Fixed issue where spaces were inserted into descriptions for mRNA expression ↵ | zsloan | |
| data in the regular search Created default collection name when the user submits a collection without naming it | |||
| 2019-07-03 | Fixed bug for creating one of the third party links on the trait page | zsloan | |
| Changed text in several pages (submit trait, mapping error) Changed header menu structure some | |||
| 2019-07-01 | a | zsloan | |
| 2019-06-30 | Made external links on trait page open new tab/window | zsloan | |
| 2019-06-28 | Added regression lines to correlation scatterplots | zsloan | |
| Fixed bug when doing correlations of non-phenotype traits against phenotype datasets Changed color of manhattan plot points (subject to change) | |||
| 2019-06-25 | Added dropdown generation to REST API and switched to using it to generate ↵ | zsloan | |
| the main search page dropdown | |||
| 2019-06-24 | Fixed issue that caused search result pages to not work in IE | zsloan | |
| 2019-06-24 | Fixed issue that caused API genotypes query to not work when no limit_to set | zsloan | |
| 2019-06-24 | Got non-LOCO GEMMA mapping working with gemma-wrapper (so caching should ↵ | zsloan | |
| work for that now) Fixed position digits and row highlighting on interval analyst table Updated default MAF to 0.05 Updated footer text | |||
| 2019-06-18 | Fixed issue with sorting involving 0's on trait page | zsloan | |
| Fixed links to dataset info pages in search results and correlation results pages | |||
| 2019-06-18 | Changed the text displayed on search results page | zsloan | |
| Added some links to index page Removed footer from search results page | |||
| 2019-06-18 | Phenotype results with long descriptions/authors look much better now + ↵ | zsloan | |
| added some links to index page | |||
| 2019-06-14 | Added some metadata to top of global search results | zsloan | |
| 2019-06-12 | Fixed error when zooming in on chromosome for rat mapping results | zsloan | |
| 2019-06-09 | Had an extra parenthesis to remove | zsloan | |
| 2019-06-09 | Issue with encoding should be fixed for both global searches now | zsloan | |
| 2019-06-09 | Fixed javascript error with phenotype global search | zsloan | |
| 2019-06-09 | Fixed issue that caused heatmap to not work (needed to tell it to use reaper ↵ | zsloan | |
| for generating genotype object) Fixed issue that caused *all* collection page functions to not load correctly (datatables wasn't loading correctly due to a new column being added) | |||
| 2019-06-09 | Added fix for error when records don't have mean expression in global search | zsloan | |
| 2019-06-07 | Global search and correlation results can handle null expression now | zsloan | |
| 2019-06-06 | Made some changes to REST API, including adding limit_to option to mapping | zsloan | |
| 2019-06-06 | Replaced ISNULL with IFNULL (which is the correct version for MySQL) | zsloan | |
| Changed the query form for getting a species' groups | |||
| 2019-06-05 | Ensured that a string is returned for SQL fields that can potentially be null | zsloan | |
| 2019-06-05 | Needed to replace single quotes with double quotes for JSON output | zsloan | |
| 2019-06-05 | Additive effects now display for manhattan plots when available | Pjotr Prins | |
| 2019-06-05 | Issue where manhattan plot points went past the edge of the plot should be ↵ | zsloan | |
| fixed now | |||
| 2019-06-05 | Fixed issue that caused interval mapping to not work because the python ↵ | zsloan | |
| implementation of the reaper Dataset object doesn't include the addinterval method (so for those situations I still use reaper) Fixed issue where the last chromosome wasn't displayed for mapping results (though still need to fix issue where points are drawn too far to the right when a specific range is viewed) | |||
| 2019-06-04 | Updated drop-downs (this probably needs to be separated out of the git ↵ | zsloan | |
| repository) | |||
| 2019-06-04 | Changed the logic for deciding y axis digits to deal with situations where ↵ | zsloan | |
| the range is less tan 0.4; not sure if more than this needs to be accounted for | |||
| 2019-06-04 | Fixed issue with probability plot y axis digits | zsloan | |
 |
index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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