| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2022-08-31 | Replace debug with error logs in Except block pre/post a session | Munyoki Kilyungi | |
| Put error logs in an Except block for easier parsing and re-word the error messages in them. * wqflask/wqflask/views.py: Delete "utility.logger" and "logger". (connect_db): Delete "g._database". Delete "logger.debug()". Use "app.logger.error" in Except block. (shutdown_session): Delete "logger.debug()". Use "app.logger.error" in Except block. | |||
| 2022-08-31 | Add transform parameter to mapping api unit test | zsloan | |
| 2022-08-31 | Change qnorm parameter to transform, so other transforms can be added later | zsloan | |
| 2022-08-31 | Add qnorm option to mapping api | zsloan | |
| 2022-08-31 | Move normf function out of quantile_normalize_vals so it can be imported by ↵ | zsloan | |
| mapping api | |||
| 2022-08-31 | Fix failing api/test_mapping.py test | zsloan | |
| 2022-08-31 | Re-add read_from_pyfile | Munyoki Kilyungi | |
| * wqflask/wqflask/database.py (read_from_pyfile): Re-add it. This is used in the sql_uri() function. | |||
| 2022-08-30 | Remove logging and unused imports from api/mapping.py | zsloan | |
| 2022-08-30 | Add genofile parameter to mapping API endpoint | zsloan | |
| 2022-08-30 | Close a database connection only once | Munyoki Kilyungi | |
| * wqflask/wqflask/database.py (database_connection): Close connection only once; otherwise an error is raised. | |||
| 2022-08-25 | Merge branch 'Alexanderlacuna-chores/gn2-queries-optimization' into testing | Frederick Muriuki Muriithi | |
| 2022-08-25 | Merge branch 'chores/gn2-queries-optimization' of ↵ | Frederick Muriuki Muriithi | |
| github.com:Alexanderlacuna/genenetwork2 into Alexanderlacuna-chores/gn2-queries-optimization | |||
| 2022-08-24 | Fix issue where literature correlations were always run against their own ↵ | zsloan | |
| dataset, instead of the target dataset | |||
| 2022-08-24 | Limit literature correlation results to top N as specified in the form | zsloan | |
| 2022-08-23 | Add support for database rollbacks if the db engine supports it. | Munyoki Kilyungi | |
| * wqflask/wqflask/database.py: Import contextlib. (database_connection): Refactor to support roll-backs. | |||
| 2022-08-23 | Delete unused function and imports. | Munyoki Kilyungi | |
| * wqflask/wqflask/database.py: Remove unused sqlalchemy imports. (read_from_pyfile): Delete it. | |||
| 2022-08-23 | integrate code for fetching traits metadata | Alexander_Kabui | |
| 2022-08-23 | function to fetch metadata | Alexander_Kabui | |
| 2022-08-20 | Divide GEMMA additive effect by 2 | zsloan | |
| 2022-08-20 | Fix JS for opening new tabs (or not) for collection page tools/options | zsloan | |
| 2022-08-19 | Fix message and function key | Frederick Muriuki Muriithi | |
| 2022-08-18 | bulk fetch n number of traits type probeset | Alexander_Kabui | |
| 2022-08-17 | Reduce incremental backoff time | Frederick Muriuki Muriithi | |
| 2022-08-17 | Do incremental backoff for mechanical rob tests | Frederick Muriuki Muriithi | |
| Sometimes the tests might be run before the service has began running. This commit delays the running of the tests for a while. | |||
| 2022-08-17 | Merge branch 'Alexanderlacuna-chores/rust-enhancements' into testing | Frederick Muriuki Muriithi | |
| 2022-08-17 | Use context managers for database cursors | Frederick Muriuki Muriithi | |
| 2022-08-17 | Merge branch 'chores/rust-enhancements' of ↵ | Frederick Muriuki Muriithi | |
| github.com:Alexanderlacuna/genenetwork2 into Alexanderlacuna-chores/rust-enhancements | |||
| 2022-08-16 | Merge dicts into single result | Frederick Muriuki Muriithi | |
| 2022-08-16 | Convert list items to single dict | Frederick Muriuki Muriithi | |
| 2022-08-16 | rename boolean variables | Alexander_Kabui | |
| 2022-08-16 | linter fixes | Alexander_Kabui | |
| 2022-08-16 | enable compute all for test | Alexander_Kabui | |
| 2022-08-16 | index error fix | Alexander_Kabui | |
| 2022-08-16 | remove flask g object | Alexander_Kabui | |
| 2022-08-16 | minor fixes for computing all correlations | Alexander_Kabui | |
| 2022-08-16 | Setup default GN_PROXY setting | Frederick Muriuki Muriithi | |
| 2022-08-15 | add default values for num overlap,corr_coeff | Alexander_Kabui | |
| 2022-08-14 | init:perform top n sample for probes | Alexander_Kabui | |
| 2022-08-12 | Update to newer lxml API | Frederick Muriuki Muriithi | |
| 2022-08-12 | Revert "Check for keys before using them." | Frederick Muriuki Muriithi | |
| This reverts commit a1cbc12f843bbdc1759d5acac5ae3630fb5d4b81. | |||
| 2022-08-12 | Merge branch 'integrate-rust-correlations' of ↵ | Frederick Muriuki Muriithi | |
| github.com:genenetwork/genenetwork2 into integrate-rust-correlations | |||
| 2022-08-12 | Add a profiling script | Frederick Muriuki Muriithi | |
| Add a script to enable profiling the code. | |||
| 2022-08-12 | Fix some issues with the tests. Add notes in code for improvements. | Frederick Muriuki Muriithi | |
| 2022-08-12 | Refactor: separate the three correlation types | Frederick Muriuki Muriithi | |
| Refactor the code such that each correlation type (sample, tissue, literature) is computed in its own function. This makes the code clearer, and helps reduce repetition. | |||
| 2022-08-12 | Fix correlation tests: Fix the test message. | Frederick Muriuki Muriithi | |
| 2022-08-12 | Check for keys before using them. | Frederick Muriuki Muriithi | |
| 2022-08-12 | Update format to prevent tissue correlation from failing | Frederick Muriuki Muriithi | |
| Update the data format of returned values so that it conforms with expectatitions. | |||
| 2022-08-12 | Check that the correlations work as expected. | Frederick Muriuki Muriithi | |
| 2022-08-12 | Fix formatting for legibility | Frederick Muriuki Muriithi | |
| 2022-08-12 | code to merge results;minor fixes | Alexander_Kabui | |
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