| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2022-08-09 | Integrate rust correlations. Deduplicate similar code. | Frederick Muriuki Muriithi | |
| - Use rust correlations rather than the slower python one - Remove code duplicated in the `wqflask/wqflask/correlation/rust_correlation.py` module within the `compute_correlation_rust` function. | |||
| 2022-08-09 | Display the probeset name in the editing form | Munyoki Kilyungi | |
| * wqflask/wqflask/templates/edit_probeset.html: Add probeset.name to the h1 tag. | |||
| 2022-08-09 | Make edit_probeset.html similar to corresponding phenotype page | Munyoki Kilyungi | |
| * wqflask/wqflask/templates/edit_probeset.html: Remove "reset" button. Make button green. Move form element into the "container" div. Add "container" class to form. Left justify labels, and the button. Remove ":" from labels. | |||
| 2022-08-09 | Delete "diff" section | Munyoki Kilyungi | |
| For both the edit phenotype and probeset pages, the diffs can be viewed from history.html. * wqflask/wqflask/templates/edit_phenotype.html: Delete "diffs" section. * wqflask/wqflask/templates/edit_probeset.html: Ditto. | |||
| 2022-08-09 | Remove "diff" logic from edit_probeset | Munyoki Kilyungi | |
| * wqflask/wqflask/metadata_edits.py (edit_probeset): Delete logic for fetching diff. Move that... (show_history): ... here * wqflask/wqflask/templates/edit_probeset.html: Update template to show diffs in a history.html. Reposition and rename the h1 tag of this page. | |||
| 2022-08-09 | Update h1 title of history page | Munyoki Kilyungi | |
| ATM, we don't show the name of the phenotype whose history we are changing. That may be updated in a future commit. * wqflask/wqflask/templates/edit_history.html: Reword h1 and remove "{{}}" which results in a jinja error. | |||
| 2022-08-09 | Fix circular import issue | Frederick Muriuki Muriithi | |
| 2022-08-09 | Integrate rust correlation for "sample" correlation selection | Frederick Muriuki Muriithi | |
| Integrate the use of the rust code to compute the correlations for the "sample" correlation selection. | |||
| 2022-08-09 | Pass trait values (X) as list not string | Frederick Muriuki Muriithi | |
| The trait values (X values) are converted to JSON within the `run_correlation` call. Since JSON has the ability to represent lists of objects, there is no point for the added conversion to and from strings. | |||
| 2022-08-08 | remove unnessary append to list | Alexander_Kabui | |
| 2022-08-08 | remove test;test is redundant | Alexander_Kabui | |
| 2022-08-08 | tests refactoring | Alexander_Kabui | |
| 2022-08-05 | Include partial_correlations.js in the search page template | zsloan | |
| 2022-08-01 | Remove console logs from scatterplot.js | zsloan | |
| 2022-08-01 | Change Make Default button to Save Settings | zsloan | |
| 2022-08-01 | Add date/time to trait page export | zsloan | |
| 2022-08-01 | Add header/description to partial correlation page | zsloan | |
| 2022-08-01 | Add index column and phenotype group code to trait export | zsloan | |
| 2022-07-28 | Use external process to compute sample correlations | Frederick Muriuki Muriithi | |
| 2022-07-27 | Disable PCA when fewer than 3 traits | zsloan | |
| 2022-07-27 | Change some text/formatting on Correlation Matrix page | zsloan | |
| 2022-07-27 | Change capitalization on index page | zsloan | |
| 2022-07-27 | Change some text/formatting for the Scree Plot | zsloan | |
| 2022-07-27 | Change search result text/formatting | zsloan | |
| 2022-07-27 | Change formatting for search term + add line break in description text | zsloan | |
| 2022-07-25 | new file module for preprocessing input | Alexander_Kabui | |
| 2022-07-25 | add test route | Alexander_Kabui | |
| 2022-07-25 | enable test route | Alexander_Kabui | |
| 2022-07-25 | Fix BNW link | zsloan | |
| 2022-07-25 | Remove Comparison Bar Chart button | zsloan | |
| 2022-07-25 | Change Interval Analyst genome browser link to use mm10 instead of mm9 | zsloan | |
| 2022-07-25 | Return config in app.config or None | Frederick Muriuki Muriithi | |
| Update the code to return the setting already set up in the app.config dictionary if it exists or None if it does not exist. | |||
| 2022-07-14 | Remove column toggle JS from show_trait.html since it's in ↵ | zsloan | |
| initialize_show_trait_tables.js | |||
| 2022-07-14 | Call DataTable() on the table id instead of referring to the_table; not | zsloan | |
| sure why this is necessary, but the search doesn't work otherwise | |||
| 2022-07-12 | Include genotypes for F1s/reference/non-reference strains when fetching | zsloan | |
| sample data for genotype traits | |||
| 2022-07-11 | Increase min-width for div containing tool buttons on search page | zsloan | |
| 2022-07-08 | Add python for exporting case attributes | zsloan | |
| 2022-07-08 | Add JS for exporting case attributes (sample metadata) | zsloan | |
| 2022-07-04 | wqflask: Remove DebugToolbarExtension | BonfaceKilz | |
| This functionality, at least how we use it, is already provided natively in python's pdb. Should someone need this, they can add it manually. * wqflask/runserver.py (app_config): Remove "flask_debugtoolbar" import and instantiation. * wqflask/utility/startup_config.py (app_config): Ditto. | |||
| 2022-07-04 | wqflask: use the raw user string if value is non-existent in redis | BonfaceKilz | |
| * wqflask/wqflask/metadata_edits.py (_get_diffs): If a user---whose value is extracted from Redis and encoded in the file name---doesn't exist in Redis, use the raw string extracted from the file. | |||
| 2022-07-04 | wqflask: Use a map over a tuple when fetching case-attributes | BonfaceKilz | |
| * wqflask/wqflask/metadata_edits.py (update_phenotype): Replace old "get_case_attributes" function call which returned a dict with the new updated version that returns a tuple. | |||
| 2022-06-21 | wqflask: views: Delete noisy logging and dead code | BonfaceKilz | |
| - Remove commented out code-blocks - Remove calls with this pattern: logger.info("Sending ...") logger.info(request.url) Should you want to inspect the local context of an environment when troubleshooting, set a breakpoint() and inspect the environment. To view everything in the local context, use "pp locals()"; and to view everything in the global context, use "pp globals()". | |||
| 2022-06-20 | Simplify partial correlation method choices | Frederick Muriuki Muriithi | |
| - Have only `Pearson's r` and `Spearman's rho` as the available choices for the partial correlations. | |||
| 2022-06-15 | templates: base: Update GN2 footer | BonfaceKilz | |
| * wqflask/wqflask/templates/base: Remove links to non-functioning mailing list. Remove link to "#genenetwork" channel that isn't currently owned/moderated. Co-authored-by: Ethan Willis <elwillis1@gmail.com> | |||
| 2022-06-13 | Check chromosome for 'Un' in search results and print N/A in such cases | zsloan | |
| 2022-06-13 | Check for chromosome of 'Un' and print location as 'Not available' in such cases | zsloan | |
| 2022-06-13 | Increase width threshold for using scroller, to prevent issue with blue ↵ | zsloan | |
| lines at bottom of table | |||
| 2022-06-13 | Limit search result descriptions to 500 characters | zsloan | |
| 2022-06-13 | Add |safe to ensure HTML entites are correctly escaped for trait descriptions | zsloan | |
| 2022-06-10 | Skip failing integration test | BonfaceKilz | |
| ATM, it's hard to by-pass the authentication decorators, and as such, skip this test for. This may be deleted later. | |||
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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