| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2021-10-18 | Merge pull request #562 from zsloan/feature/add_resizeable_columns | zsloan | |
| Add Resizeable Table Columns | |||
| 2021-10-14 | Merge pull request #605 from genenetwork/clustered_heatmaps | BonfaceKilz | |
| Clustered heatmaps | |||
| 2021-10-14 | Merge pull request #607 from Alexanderlacuna/feature/integrate-gn3-wgcna | BonfaceKilz | |
| test template for gn3 wgcna | |||
| 2021-10-13 | Fix issue where score_type being set wrong caused an error when exporting ↵ | zsloan | |
| mapping results (a while back it was changed from LOD to -logP) | |||
| 2021-10-13 | Add some documentation for generating heatmaps | Frederick Muriuki Muriithi | |
| Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Add some documentation on generating the heatmaps, that would be useful for the end user. | |||
| 2021-10-13 | Update the action button text | Frederick Muriuki Muriithi | |
| Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Update the action button text to more closely correspond to the action that the button triggers. | |||
| 2021-10-13 | resolve merge conflict | Alexander Kabui | |
| 2021-10-13 | disable heatmap image | Alexander Kabui | |
| 2021-10-12 | Merge branch 'testing' into feature/add_resizeable_columns | zsloan | |
| 2021-10-12 | Fixed export_mapping_results test in test_run_mapping.py | zsloan | |
| 2021-10-12 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵ | Frederick Muriuki Muriithi | |
| clustered_heatmaps | |||
| 2021-10-10 | replace form input with select options | Alexander Kabui | |
| 2021-10-10 | remove commented code and debug statements | Alexander Kabui | |
| 2021-10-10 | ui:show phenotypes page | Alexander Kabui | |
| 2021-10-10 | minor fixes for ui | Alexander Kabui | |
| 2021-10-10 | modifications for wgcna form page | Alexander Kabui | |
| 2021-10-10 | enable wgcna in gn2 toolbar | Alexander Kabui | |
| 2021-10-10 | pep8 formatting && remove unused functions | Alexander Kabui | |
| 2021-10-10 | call run_wgcna in views && render test template | Alexander Kabui | |
| 2021-10-10 | pep8 formatting fix for parsing response data | Alexander Kabui | |
| 2021-10-09 | add function to call wgcna api | Alexander Kabui | |
| 2021-10-09 | add function to process trait sample data | Alexander Kabui | |
| 2021-10-09 | function to fetch trait data | Alexander Kabui | |
| 2021-10-09 | add function to process image data | Alexander Kabui | |
| 2021-10-09 | unittest for processing wgcna output | Alexander Kabui | |
| 2021-10-09 | add function to process gn3 wgcna output | Alexander Kabui | |
| 2021-10-08 | Fixed some issues with scale and score_type in mapping export + include ↵ | zsloan | |
| mapping method in export filename | |||
| 2021-10-08 | Fix issue where outliers weren't being highlighted for rows drawn by ↵ | zsloan | |
| Scroller (so all rows beyond a certain point) | |||
| 2021-10-08 | Fixed the sort to account for both chr and pos in a kind of hack-y way + ↵ | zsloan | |
| added some comments + changed EOL to LF because the file suddenly started including EOL characters | |||
| 2021-10-08 | Adding convert_dol_genotypes.py to scripts; everything is hard-coded in it ↵ | zsloan | |
| since I was only writing it to generate a specific file and it probably won't be re-used | |||
| 2021-10-06 | scripts: resource: Add option for specifying a groups uuid | BonfaceKilz | |
| 2021-10-06 | scripts: group: Replace args.group_name with data["field"] | BonfaceKilz | |
| 2021-10-06 | scripts: group: Update docstrings for "create_group_data" | BonfaceKilz | |
| 2021-10-06 | scripts: group: Break up long line | BonfaceKilz | |
| 2021-10-06 | scripts: group: Fix indentation | BonfaceKilz | |
| 2021-10-06 | workflows: main.yml: Disable link checking | BonfaceKilz | |
| 2021-10-06 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵ | Frederick Muriuki Muriithi | |
| clustered_heatmaps | |||
| 2021-10-06 | scripts: group: Remove empty `""` value for data.get | BonfaceKilz | |
| data.get("field") will default to None if there is no value; and None is falsy. | |||
| 2021-10-06 | scripts: group: Remove unused import | BonfaceKilz | |
| 2021-10-06 | scripts: group: Use a unique key to identify a group | BonfaceKilz | |
| 2021-10-06 | display images | Alexander Kabui | |
| 2021-10-06 | Enable selection of heatmap orientation | Frederick Muriuki Muriithi | |
| Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi * Provide the user with the UI elements to enable them select the orientation of the heatmap that will be produced. | |||
| 2021-10-06 | doc: docker-container.org: Remove python2 gn2 docker set-up command | BonfaceKilz | |
| 2021-10-06 | tests: test_run_mapping: Add missing "name" attribute to tests | BonfaceKilz | |
| 2021-10-06 | tests: test_run_mapping: Add missing calls | BonfaceKilz | |
| After adding the missing attribute to "self.trait", we need to also need to update some missing calls. | |||
| 2021-10-06 | tests: test_run_mapping: Fix failing assert when getting perm strata | BonfaceKilz | |
| 2021-10-06 | tests: test_run_mapping: Add missing attribute to "self.trait" | BonfaceKilz | |
| 2021-10-06 | tests: test_run_mapping: Add missing positional argument "vals_hash" | BonfaceKilz | |
| 2021-10-06 | add datatable for eigengenes | Alexander Kabui | |
| 2021-10-05 | Merge branch 'testing' into feature/add_resizeable_columns | zsloan | |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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