| Age | Commit message (Expand) | Author |
|---|---|---|
| 2020-08-31 | Add github templates for filing bugs, user stories/ features and PRs•••* .github/ISSUE_TEMPLATE/bug_report.md : Add template for filing bug reports. * .github/ISSUE_TEMPLATE/feature_request.md: Add template for filing a feature. * .github/ISSUE_TEMPLATE/user_story.md: Add a template for creating a user story for a feature. * .github/PULL_REQUEST_TEMPLATE.md: Add a template for filing a PR. | BonfaceKilz |
| 2020-08-31 | Merge pull request #428 from BonfaceKilz/chore/delete-datatables-extensions-f...•••Delete dataTables and it's extensions from git | BonfaceKilz |
| 2020-08-29 | Fixed issue where exporting traits would throw an error if a dataset's•••group didn't have an InbredSetCode set in the DB * wqflask/utility/authentication_tools.py - Changed get_group_code to return an empty string instead of None if InbredSetCode doesn't exist for a dataset group * wqflask/wqflask/views.py - Changed zipped export filename to "export_(datetime)" instead of "collection_(datetime)" since this export can occur from both the collection page and the global search page | zsloan |
| 2020-08-29 | Fixed issue with exporting traits from multiple different groups from•••the collection page (the filename wasn't being set) * wqflask/wqflask/views.py - Set filename to "collection_(datetime)" in export_traits_csv because it wasn't being set before | zsloan |
| 2020-08-28 | Delete dataTables and it's extensions from git•••* wqflask/wqflask/static/new/packages/DataTables/: Delete folder. | BonfaceKilz |
| 2020-08-27 | Added logic that creates a user account if an e-mail is added to a group•••that isn't already associated with a GN2 account and sends the user an e-mail; still need to test * wqflask/wqflask/group_manager.py - Added logic sending an invitation e-mail if user_details aren't found for any of the e-mails provided when adding users to a group | zsloan |
| 2020-08-27 | Added function for sending an invitation e-mail•••* wqflask/wqflask/user_login.py - Added send_invitation_email function, which does what it says | zsloan |
| 2020-08-27 | Added manager_user.html because it was missing from git | zsloan |
| 2020-08-25 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan |
| 2020-08-25 | Fixed issue in DatasetType that caused an error when trying to load new•••datasets * wqflask/base/data_set.py - Added fetchone() to g.db.execute() which is what was causing the error | zsloan |
| 2020-08-25 | Merge pull request #427 from BonfaceKilz/Build/add-scientific-js-datatables-p...•••Build/add scientific js datatables plugin | zsloan |
| 2020-08-26 | Add check for "scientific.js" dataTables extension plugin•••* test/requests/link_checker.py (check_packaged_file): Add it. | BonfaceKilz |
| 2020-08-25 | This should fix an issue where the new qtlreaper wouldn't work properlty•••with genotypes that only have cM positions * wqflask/wqflask/marker_regression/qtlreaper_mapping.py - parse_reaper_output is changed to check if cM and Mb exist in output when creating marker obs * wqflask/wqflask/marker_regression/run_mapping.py - Changed export_mapping_results to properly deal with all combinations of cM and Mb positions (both and either/or) | zsloan |
| 2020-08-25 | Merge pull request #425 from BonfaceKilz/refactor/extract-htmlgen-methods-to-...•••Refactor/extract htmlgen methods to wrapper class | zsloan |
| 2020-08-25 | Use scientific.js dataTables extension plugin from guix | BonfaceKilz |
| 2020-08-25 | Merge pull request #426 from BonfaceKilz/Build/use-naturaljs-datatables-exten...•••Build/use naturaljs datatables extensions | zsloan |
| 2020-08-24 | Add check for "natural.js" in Mechanical Rob•••* test/requests/link_checker.py (check_packaged_file): Add it. | BonfaceKilz |
| 2020-08-24 | Use natural.js dataTables extension plugin from guix | BonfaceKilz |
| 2020-08-24 | Remove non-keyword args•••* wqflask/wqflask/marker_regression/display_mapping_results.py (HtmlGenWrapper)[create_image_tag]: Remove "src" and "alt" as function parameters. | BonfaceKilz |
| 2020-08-24 | Replace "HtmlGen" method calls with those from "HtmlGenWrapper"•••* wqflask/wqflask/marker_regression/display_mapping_results.py (DisplayMappingResults): Replace direct calls to HtmlGen with methods from the constructed wrapper class "HtmlGenWrapper". | BonfaceKilz |
| 2020-08-24 | Add new wrapper class for HtmlGen method•••* wqflask/wqflask/marker_regression/display_mapping_results.py: Add new class | BonfaceKilz |
| 2020-08-24 | Add tests for the HtmlGenWrapper class•••* wqflask/tests/wqflask/marker_regression/test_display_mapping_results.py: Add new tests | BonfaceKilz |
| 2020-08-24 | Fix some pylint errors•••* wqflask/wqflask/marker_regression/display_mapping_results.py: Remove unused imports and add fix some pylint errors | BonfaceKilz |
| 2020-08-24 | Remove unused imports•••* wqflask/utility/Plot.py: Remove unused imports like "numarray". "numarray" is does not have py3 support so it's important to remove references to it. | BonfaceKilz |
| 2020-08-24 | Rename file•••* wqflask/tests/wqflask/marker_regression/test_display_mapping_results.py: Rename test_display_marking_results.py to test_display_mapping_results.py | BonfaceKilz |
| 2020-08-24 | Fix failing test•••* wqflask/tests/wqflask/api/test_gen_menu.py: Update assertion. Result data introduced in 092212df Signed-off-by: BonfaceKilz <bonfacemunyoki@gmail.com> | BonfaceKilz |
| 2020-08-24 | Fixed issue where im_drawer wasn't being set in drawHaplotypeBand•••* wqflask/wqflask/marker_regression/display_mapping_results.py - defined im_drawer in drawHaplotypeBand to fix errror and removed an unused import | zsloan |
| 2020-08-24 | The function draw_rotated_text_ was writing an image to /tmp, which GN2•••user apparently doesn't have access to, so I replaced it with a link to the dynamically set TEMPDIR * wqflask/utility/pillow_utils.py - Replaced "/tmp/" in image location with TEMPDIR | zsloan |
| 2020-08-22 | Set min-width for search result table, since the description column•••often looks weird if it gets below a certain width * wqflask/wqflask/templates/search_result_page.html - Set min-width of table container div to 1500px since that seems to be a reasonable width that prevents the description column from getting too narrow | zsloan |
| 2020-08-20 | Changed Molecular Trait Datasets to Molecular Traits in the Type•••drop-down on the home page * wqflask/wqflask/api_gen_menu.py - Changed where Molecular Trait Datasets was hardcoded to Molecular Traits | zsloan |
| 2020-08-20 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan |
| 2020-08-20 | Merge pull request #423 from BonfaceKilz/build/use-datatable-extensions-from-...•••Build/use datatable extensions from guix | zsloan |
| 2020-08-20 | Check the availability of datatables extension files from guix•••* test/requests/link_checker.py (check_packaged_js_files): Add it. * test/requests/test-website.py: Use above method. | BonfaceKilz |
| 2020-08-20 | Use dataTables.colResize.js and naturalSort from guix | BonfaceKilz |
| 2020-08-20 | Use buttons.colVis.min.js from guix | BonfaceKilz |
| 2020-08-20 | Use buttons.bootstrap.css from guix | BonfaceKilz |
| 2020-08-20 | Use scroller.dataTables.min.css from guix | BonfaceKilz |
| 2020-08-20 | Use dataTables.colReorder.js from guix | BonfaceKilz |
| 2020-08-20 | Use jquery.dataTables.js from guix | BonfaceKilz |
| 2020-08-20 | Use dataTables.buttons.min.js from guix | BonfaceKilz |
| 2020-08-20 | Use buttons.dataTables.min.css from guix | BonfaceKilz |
| 2020-08-19 | Added Invert button to collection page•••* wqflask/wqflask/templates/collections/view.html - Added the Invert button back to the collection page; it was removed in the past but Rob decided it should be re-added | zsloan |
| 2020-08-19 | Tools used from the collection page now use all traits if no rows are•••checked and there are fewer than 100 traits in the table * wqflask/wqflask/static/new/javascript/search_results.js - Created get_traits_from_table function to get the list of traits and check if none are selected, and also renamed the previous function also called get_traits_from_table to submit_traits_to_export_or_bnw since that better describes what the function does | zsloan |
| 2020-08-19 | Show short labels by default in Correlation Matrix•••* wqflask/wqflask/templates/correlation_matrix.html - remove display: none for short label div | zsloan |
| 2020-08-17 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan |
| 2020-08-17 | Merge pull request #417 from BonfaceKilz/feature/pil-pillow-conversion•••Resolve merge conflicts from Pil Pillow conversion branch | zsloan |
| 2020-08-18 | Fix positioning for many instances of text in the mapping figure•••* wqflask/wqflask/marker_regression/display_mapping_results.py: Many text instances had their positions changed by the switch from piddle to PIL. Change various Y offsets and in some cases changing the logic of the way text is positioned related to its length and font size. * wqflask/wqflask/static/fonts/verdanab.ttf: Add bold Verdana, since there needs to be a separate font file for bold text. | zsloan |
| 2020-08-17 | Placed X/Y trait info before the table on the correlation scatterplot•••page * wqflask/wqflask/templates/corr_scatterplot.html - reordered table and X/Y trait info divs | zsloan |
| 2020-08-10 | Add fonts for pillow•••* wqflask/wqflask/marker_regression/display_mapping_results.py: replace piddle method with PIL.ImageFont * wqflask/wqflask/static/fonts: Add fonts in path | Pjotr Prins |
| 2020-08-08 | Add a basic test for test_display_marking_results.py•••* wqflask/tests/wqflask/marker_regression/__init__.py: Add it * wqflask/tests/wqflask/marker_regression/test_display_marking_results.py: Check that PIL colors are being used instead of the deprecated Piddle colors. | BonfaceKilz |
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| GeneNetwork (2nd generation) |
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