| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2018-03-20 | Refactor startup config for gunicorn and werkzeug | Pjotr Prins | |
| 2018-03-20 | Fix | Pjotr Prins | |
| 2018-03-20 | Authentication: some mods around defaults | Pjotr Prins | |
| 2018-03-19 | RELEASENOTES | Pjotr Prins | |
| 2018-03-19 | - Disabled PYTHONPATH injection - fix Guix instead, see ↵ | Pjotr Prins | |
| https://github.com/pjotrp/genenetwork2/commit/63a5c8a42ad02e9126bb207465ff5eca98f6515d - Renamed WQFLASK_SETTINGS to GN2_SETTINGS | |||
| 2018-03-19 | Merge pull request #5 from fredmanglis/testing | Pjotr Prins | |
| Testing | |||
| 2018-03-18 | Initialise mapping tests | Muriithi Frederick Muriuki | |
| * Add mapping tests, and build the first of the tests. | |||
| 2018-03-18 | Move import to the top of the page. | Muriithi Frederick Muriuki | |
| * Mainly to tell the dependencies easily. | |||
| 2018-03-18 | Check that key exists before using it | Muriithi Frederick Muriuki | |
| * Ensure the key exists in the json object/dictionary, before trying to use it to retrieve a value. | |||
| 2018-03-14 | Add tests for main web functionality | Muriithi Frederick Muriuki | |
| 2018-03-12 | Add tests to check links. | Muriithi Frederick Muriuki | |
| 2018-03-09 | Add link_checker module | Muriithi Frederick Muriuki | |
| * Add the module that will hold the code to test the links on the system. | |||
| 2018-03-09 | Use argparse to handle arguments | Muriithi Frederick Muriuki | |
| * Use argparse to handle commandline arguments. * Create initial layout of how the code might end up - lots of the code is currently commented out. | |||
| 2018-02-23 | Add tests to check that the UI is setup correctly | Muriithi Frederick Muriuki | |
| * Check that the links for OAuth2 logins via ORCID and GitHub are setup correctly. | |||
| 2018-02-23 | Provide connections to elasticsearch | Muriithi Frederick Muriuki | |
| * Provide connections to elasticsearch at various points in the code. These oversight was caught while running tests. | |||
| 2018-02-23 | Add new tests for orcid logins | Muriithi Frederick Muriuki | |
| 2018-02-23 | Add new test for github logins | Muriithi Frederick Muriuki | |
| 2018-02-23 | Remove failing code | Muriithi Frederick Muriuki | |
| * With the parameterized module, the testcase cannot be run independently at this time. | |||
| 2018-02-21 | Simplify test. Check for content, rather than url | Muriithi Frederick Muriuki | |
| * The test functions were very similar, so this commit refactors out the common test code to a single method, and passes in the data to the test using the parameterized package. * Check that the page content after a login attempt is the expected content, rather than checking the url. | |||
| 2018-02-21 | Fix assumption of existing collection | Muriithi Frederick Muriuki | |
| * When logging in, if a user selects "Import existing collections", the system would throw an exception, since Redis would return a NoneType, which would then be accessed by json.loads(), which doesn't seem to know how to process that. This fixes that, by providing a string representing an empty json array ("[]"), in place of the NoneType. | |||
| 2018-02-19 | Add more login tests. | Muriithi Frederick Muriuki | |
| 2018-02-19 | Add a runner for all integration tests. | Muriithi Frederick Muriuki | |
| 2018-02-19 | Add test for local login | Muriithi Frederick Muriuki | |
| * Add an integration test to test that the login process for users registered locally to genenetwork2 works as expected. | |||
| 2018-02-19 | Create parametrized superclass for tests | Muriithi Frederick Muriuki | |
| * Since the tests require that some parameters be provided while running the tests, create a class that helps abstract away the details of retrieving and setting the expected parameters. | |||
| 2018-02-19 | Rename file and move common code | Muriithi Frederick Muriuki | |
| * Rename the file to make it an importable module * Refactor the test to move common code out to a super class. | |||
| 2018-02-16 | Add registration test | Muriithi Frederick Muriuki | |
| * Add integration test to check the registration process. | |||
| 2018-02-16 | Merge branch 'pjotrp-gn-testing-es' into testing | Muriithi Frederick Muriuki | |
| 2018-02-15 | Requests added | Pjotr Prins | |
| 2018-02-15 | Added unittest example | Pjotr Prins | |
| 2018-02-15 | Fixing authentication stuff so it uses parameters properly. Also no ↵ | Pjotr Prins | |
| PYTHONPATH needed as it is now in the Guix build. | |||
| 2018-02-15 | Fix conflict | Pjotr Prins | |
| 2018-02-13 | Add tests for Registration process. | Muriithi Frederick Muriuki | |
| 2018-02-13 | Update module to make it more testable | Muriithi Frederick Muriuki | |
| * Update functions to make them more testable. * Update code using updated functions. | |||
| 2018-02-13 | @zsloan: we should introduce full parameter checking and sensible defaults ↵ | Pjotr Prins | |
| for every page we work on. It will help bug tracking. Probably fixes #279 | |||
| 2018-02-12 | Merge pull request #277 from pjotrp/gn-production | zsloan | |
| Gn production | |||
| 2018-02-11 | Added gunicorn pid so we can not run twice | Pjotr Prins | |
| 2018-02-11 | Using eventlet workers | zsloan | |
| 2018-02-10 | Fix env variable $GEMMA_WRAPPER_COMMAND | Pjotr Prins | |
| 2018-02-10 | Fixing GEMMA LOCO | Pjotr Prins | |
| 2018-02-10 | Fixed finding PATHs - one return statement! | Pjotr Prins | |
| 2018-02-10 | Check for bimbam path and bail out if it is missing | Pjotr Prins | |
| 2018-02-09 | Check elasticsearch at point of use | Muriithi Frederick Muriuki | |
| * Instead of checking for the state of elasticsearch at startup, check the state at the moment the user requests a feature that depends on elasticsearch. This reduces the chances that the user is dropped onto an exception page when elasticsearch server goes down. | |||
| 2018-02-09 | Add check for elasticsearch | Muriithi Frederick Muriuki | |
| * Add some extra checks to ensure that elasticsearch is running before presenting the UI to the user. | |||
| 2018-02-05 | Add code to allow user to change password | Muriithi Frederick Muriuki | |
| * After the email is sent to the user, there is need to provide a way for the user to actually change their password, and have the results saved. | |||
| 2018-02-05 | Refactor common items to more generic methods. | Muriithi Frederick Muriuki | |
| * Refactor code that can be used in more than one place to a more generic method/function that's called by other methods | |||
| 2018-02-05 | Send emails for forgotten passwords | Muriithi Frederick Muriuki | |
| * Update the code so that it sends out emails for the "forgot password" feature. | |||
| 2018-02-05 | Add SMTP configuration variables | Muriithi Frederick Muriuki | |
| * Add configuration variables to enable the system connect to the configured SMTP server to send out emails. | |||
| 2018-02-05 | Check each part of the PYTHONPATH | Muriithi Frederick Muriuki | |
| * PYTHONPATH may be composed of multiple locations in the filesystem, thus the need to test that each location exists and is a directory. | |||
| 2018-02-05 | Merge remote-tracking branch 'origin/testing' into testing | Muriithi Frederick Muriuki | |
| 2018-01-31 | Merge pull request #275 from pjotrp/pjotr | zsloan | |
| Added cli swith and set timeout to 3 minutes for gunicorn-dev mode | |||
 |
index : genenetwork2 | |
| GeneNetwork (2nd generation) |
| aboutsummaryrefslogtreecommitdiff |