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2019-10-09Added a couple affiliates to the index pagezsloan
2019-10-09Fixed issue where it threw an error for species other than mouse or human ↵zsloan
due to alias search
2019-10-08Fixed serious issue that caused output to be wrong for new reaper mappingzsloan
Haplotype analyst now works for GEMMA Increased margin a bit to fix minor issue with buttons getting cut off on certain Safari versions for bar chart
2019-10-04Fixed issue where there was an error if the REST API used for aliases was downzsloan
Added option to download as JPEG in addition to SVG for basic stats figures
2019-10-04Added back in the Probes option that was missing from GN2, though need to ↵zsloan
verify that the logic for showing it is correct
2019-10-03Bar chart y axis range should update with transformszsloan
Changed the way aliases are used in searches to hopefully limit results to things that make sense Fixed issue where headers didn't appear correctly for correlation results when correlating against a genotype dataset
2019-10-01Changed alias search to only search aliases in symbol fieldzsloan
Fixed issue where authors sometimes weren't encoded correctly for global search
2019-09-27Fixed an issue that caused Redis to throw an error when creating collectionszsloan
2019-09-27Added extra larger buttons to submit changes to news and other pages + fixed ↵zsloan
issue where encoding was sometimes weird for Authors in search result (still need to do this in other places)
2019-09-25Added option to edit most of the help pages except for Linkszsloan
2019-09-24Fixed issue that caused zooming for mapping to not work (that was caused by ↵zsloan
the fix for zooming into temp trait mapping results)
2019-09-24Fixed issue that caused GEMMA to not work with genotype files without cM, ↵zsloan
though this issue still needs to be dealt with to get the new qtlreaper working
2019-09-24Fixed some minor html issues with the index page and added the globe thingy ↵zsloan
that shows where people have visited from
2019-09-24Fixed issue that caused logging in to stop working with new GUIX buildzsloan
Removed some unused JS libraries
2019-09-20Converted permutation histogram to use plotlyzsloan
2019-09-20Include wikidata aliases in search; need to make it also include GN alises ↵zsloan
though
2019-09-20Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2019-09-20Merge pull request #369 from genenetwork/revert-366-360_update_htmlgenzsloan
Revert "Migrate to newer HTMLGen"
2019-09-20Revert "Migrate to newer HTMLGen"revert-366-360_update_htmlgenzsloan
2019-09-20Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2019-09-20Fixed issue where remapping or zooming in didn't work for temp/PCA traitszsloan
2019-09-20Merge pull request #366 from fredmanglis/360_update_htmlgenzsloan
Migrate to newer HTMLGen
2019-09-20Merge branch 'testing' into 360_update_htmlgenzsloan
2019-09-09Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2019-09-09Just adding the option to remove columns from correlation results and the ↵zsloan
changes to permutation histogram and table widths
2019-09-09Revert "Add option to hide columns in correlation results"zsloan
This reverts commit cc12fe06593f4957fb2b5b641ebe7e5cf43453b1. Mistakenly included changes to tools.py that are only for the new guix build
2019-09-09Add option to hide columns in correlation resultszsloan
Increased width of permutation histogram Increased a couple table widths that had crowded header text on certain browers (maybe just Safari)
2019-09-06Fix name of javascript-twitter-post-fetcherPjotr Prins
2019-08-29Fixed issue where LOD to LRS conversions weren't showing up correctly in the ↵zsloan
table Fixed issue where non-LOCO GEMMA wasn't working correctly
2019-08-29Fixed remaining issue where columns didn't show up right and the mean/r ↵zsloan
filter didn't work right for non-ProbeSet target datasets
2019-08-29Added default Loading text for dropdownszsloan
Changed order of columns for correlatoin page and removed Y scrolling Changed name and order of top menu items some
2019-08-27Removed part of a query that was slowing down dropdown menu generation; ↵zsloan
doesn't seem to be needed, but should keep an eye out for any issues
2019-08-27Zooming on a chromosome now also zooms the genome browserzsloan
Added genome browser css because it wasn't previously committed
2019-08-27Fixed issue that caused Variant Browser to stop working (related to change ↵zsloan
to return query results as unicode) Fixed issue that was causing Indel results in the Variant Browser to not work
2019-08-26Capitalized first letter in description on trait pagezsloan
2019-08-26Output filenames are now passed around when when zooming with the new ↵zsloan
qtlreaper, so zooming into chromosomes and ranges should be faster Updated genome browser and fixed an issue where it created multiple copies when the tab was clicked repeatedly Added option to filter correlation page results by R and mean expression
2019-08-23Genome Browser only loads when the tab is clicked now, for slower ↵zsloan
computers/browsers
2019-08-22Changed header drop-down menu layoutzsloan
Added a couple new third party links Added link to GN1 trait page in trait pages Fixed gene global search table appearance
2019-08-20Added horizontal scroll for mapping figure when window isn't wide enoughzsloan
Changed the way some mapping options are displayed on trait page Changed the header for the stats table and bar graph to increase the trait description
2019-08-16Added text for LOD searches back to index pagezsloan
2019-08-15Fixed bug related to adding LOD search that caused non-keyword searches to ↵zsloan
not work
2019-08-15Added change to make search result page description correct for LOD ↵zsloan
searches, since that was missing from last commit
2019-08-15LOD searches should now also workzsloan
2019-08-14removed LOD text from index page until LOD search works and cleaned up ↵zsloan
mapping options appearance/text some
2019-08-14Genome browser now takes chromosome list and lengths as input so it will ↵zsloan
work correctly with non-mouse species or centimorgan positions
2019-08-13Updated text on main search pagezsloan
2019-08-13Annotation links for markers only appear if they're in our database nowzsloan
2019-08-12Fixed some things to update the genome browser and get it running correctlyzsloan
Fixed issue where trait page for genotype traits didn't work Removed bad y axis title on probability plot
2019-08-07Added Christian's genome browser, but still need to clean things up a bunch ↵zsloan
since now it has to create two separate marker lists
2019-08-07Fixed issue with non-LOCO GEMMA mappingzsloan
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