| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2022-02-18 | wqflask: Remove python pre-2.2 checks. | Arun Isaac | |
| These checks are only relevant for python pre-2.2. * wqflask/utility/svg.py: Remove python pre-2.2 checks. | |||
| 2022-02-18 | README: Replace GitHub actions badge with Laminar CI badge. | Arun Isaac | |
| * README.md: Replace GitHub actions badge with Laminar CI badge. | |||
| 2022-02-17 | bin: Allow for not starting redis. | Arun Isaac | |
| redis needs to be started and managed as a separate service. We create a flag NO_REDIS so that it can be so. If NO_REDIS is not defined, the present behavior of starting redis remains. Thus current use cases are not broken. * bin/genenetwork2: Allow for not starting redis with the NO_REDIS flag. | |||
| 2022-02-17 | etc: Close VERSION file after opening. | Arun Isaac | |
| Use a context manager so that the VERSION file is automatically closed on exiting the block. * etc/default_settings.py: Close VERSION file after opening. | |||
| 2022-02-14 | Add search text for cis/transLRS/LOD searches | zsloan | |
| There wasn't any search text for cis/trans searches including both chromosome and exclusion zone, so I added somee | |||
| 2022-02-14 | Fix CisTrans search bug | zsloan | |
| ', Geno' was being added to the FROM clause, which is wrong becausee Geno is included in the query via a JOIN (and caused an error making those searches not work) | |||
| 2022-02-09 | doc: Document how to fetch case-attribute data from a sample-list | BonfaceKilz | |
| 2022-02-09 | variable naming and docstrings fix | Alexander Kabui | |
| 2022-02-09 | handle exceptions | Alexander Kabui | |
| 2022-02-09 | autopep8 formatting | Alexander Kabui | |
| 2022-02-09 | delete unused js packages | Alexander Kabui | |
| 2022-02-09 | autopep8 formatting | Alexander Kabui | |
| 2022-02-09 | fix for performing parametric analysis | Alexander Kabui | |
| 2022-02-09 | minor template fixes | Alexander Kabui | |
| 2022-02-09 | add trait lists and links to ctl plot | Alexander Kabui | |
| 2022-02-09 | disabble autoslide | Alexander Kabui | |
| 2022-02-09 | fix for ctl ui page | Alexander Kabui | |
| 2022-02-09 | endpoint to download network files | Alexander Kabui | |
| 2022-02-09 | btn download for network sif and node file | Alexander Kabui | |
| 2022-02-09 | modify ctl endpoint | Alexander Kabui | |
| 2022-02-09 | minor fixes for images | Alexander Kabui | |
| 2022-02-09 | fix for dcor and LOD rounding | Alexander Kabui | |
| 2022-02-09 | styling for carousel | Alexander Kabui | |
| 2022-02-09 | add carousel for plots | Alexander Kabui | |
| 2022-02-09 | ui form modifications | Alexander Kabui | |
| 2022-02-09 | minor refactoring to destruct objects | Alexander Kabui | |
| 2022-02-09 | template file cleanup | Alexander Kabui | |
| 2022-02-09 | rename template file | Alexander Kabui | |
| 2022-02-09 | minor bug fixes | Alexander Kabui | |
| 2022-02-09 | process significant table results | Alexander Kabui | |
| 2022-02-09 | delete class initiliazation object | Alexander Kabui | |
| 2022-02-09 | minor refactoring | Alexander Kabui | |
| 2022-02-09 | pep8 formatting | Alexander Kabui | |
| 2022-02-09 | fetch pheno input data | Alexander Kabui | |
| 2022-02-09 | parse geno input data | Alexander Kabui | |
| 2022-02-09 | parse input data | Alexander Kabui | |
| 2022-02-09 | init py file:call gn3 ctl api | Alexander Kabui | |
| 2022-02-09 | add ui template for ctl | Alexander Kabui | |
| 2022-02-07 | Double quote shell variables to prevent globbing and word splitting | Frederick Muriuki Muriithi | |
| 2022-02-07 | Add 'api' to root of partial correlations URL | Frederick Muriuki Muriithi | |
| Add api to the root of the partial correlations URL, making it: /api/correlations/partial rather than: /correlations/partial | |||
| 2022-02-05 | Update live jupyter notebooks | jgart | |
| 2022-02-02 | Add covarstruct for rqtl mapping | zsloan | |
| Added a function for generating a covarstruct file required for R/qtl mapping This file contains info on whether each covariate is categorical or numerical and is generated by querying the TraitMetadata table in the DB | |||
| 2022-01-31 | wqflask: Use a more semantic name when downloading samples | BonfaceKilz | |
| * wqflask/wqflask/metadata_edits.py (get_sample_data_as_csv): Save csv file to be downloaded as "sample-name-<dataset_id>.csv" instead of "myplot.csv" | |||
| 2022-01-29 | Fix bug: rho/r not set appropriately | Frederick Muriuki Muriithi | |
| Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * The column heading, and the "data-column-heading" values depend on the correlation method. The initial idea had been to set these values up from the server. With the use of Javascript, however, the system defaults to using `r`, which is a bug when the method is any of the Spearman's methods. | |||
| 2022-01-29 | Include the "Locus" in the display | Frederick Muriuki Muriithi | |
| Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi | |||
| 2022-01-29 | Provide missing argument | Frederick Muriuki Muriithi | |
| Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi | |||
| 2022-01-29 | Fix check for non-existent values | Frederick Muriuki Muriithi | |
| 2022-01-29 | Hide template row instead of deleting it | Frederick Muriuki Muriithi | |
| 2022-01-29 | Add more items to trait string | Frederick Muriuki Muriithi | |
| Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi | |||
| 2022-01-29 | Update styling: Display traits in a tabular-like form | Frederick Muriuki Muriithi | |
| Issue: https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/partial-correlations.gmi * Display the trait details in a tabular-life form without using a table. | |||
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