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2020-11-26PEP8 format and remove unnecessary commentsAlexander Kabui
2020-11-26refactor render_markdown function in wqflask/markdown_routes.pyAlexander Kabui
2020-11-26add and register facilities blueprintAlexander Kabui
2020-11-26add facilities pageAlexander Kabui
2020-11-26delete environments html pagEAlexander Kabui
2020-11-26add table extension to support conversion of markdown tables to HTMLAlexander Kabui
2020-11-26add and register environments blueprintAlexander Kabui
2020-11-26remove environment from /wqflask/views.pyAlexander Kabui
2020-11-26add environment markdownAlexander Kabui
2020-11-26add re-used css to markdown.css for easy maintenance and reusabilityAlexander Kabui
2020-11-26add links pageAlexander Kabui
2020-11-26add endpoint for polices,environments and policiesAlexander Kabui
2020-11-26add edit button in glossary pageAlexander Kabui
2020-11-26register view,policies blueprintAlexander Kabui
2020-11-26add policies pageAlexander Kabui
2020-11-26build url for functionsAlexander Kabui
2020-11-26add css for containerAlexander Kabui
2020-11-26remove static views form wqflask/view.pyAlexander Kabui
2020-11-26delete templates/links pageAlexander Kabui
2020-11-26move css to markdown and add referencesAlexander Kabui
2020-11-26delete reference html pageAlexander Kabui
2020-11-26modify github buttonAlexander Kabui
2020-11-26modify references linksAlexander Kabui
2020-11-26register references blueprintAlexander Kabui
2020-11-26add reference markdown and github buttonAlexander Kabui
2020-11-25Merge pull request #489 from Alexanderlacuna/fix-referencesBonfaceKilz
Fix broken UI
2020-11-24solve issues to do with decoding in python3Alexander Kabui
2020-11-23Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-11-23Changed correlation matrix cells for traits with zero shared samples to ↵zsloan
instead say N/A and be a shade of grey
2020-11-21Merge pull request #488 from ↵BonfaceKilz
BonfaceKilz/feature/fetch-md-files-from-gh-docs-repo Feature/fetch md files from gh docs repo
2020-11-21Use docker image with markdown packagedBonfaceKilz
* .github/workflows/main.yml (jobs): [container]: Use image that is on python3-genenetwork "ad741c1" which has python-markdown packaged.
2020-11-20Replace mockobject with dataclassesBonfaceKilz
* wqflask/tests/unit/wqflask/test_markdown_routes.py (MockRequests404): Use dataclasses. (MockRequests200): Ditto.
2020-11-20Update tests to use new gn2-docs urlBonfaceKilz
2020-11-20Replace mistunes with markdown libraryBonfaceKilz
* wqflask/wqflask/markdown_routes.py (render_markdown): Use markdown library instead of mistunes.
2020-11-20Point url for fetching md content to gn-docs repoBonfaceKilz
* wqflask/wqflask/markdown_routes.py (render_markdown): Use gn-docs URL to fetch markdown content.
2020-11-20Remove glossary markdown templateBonfaceKilz
* wqflask/wqflask/static/markdown/: Delete folder. Files moved to https://github.com/genenetwork/gn-docs
2020-11-19Removed lines that check that all traits are part of the same group,zsloan
since it might be the case in the future that different groups still share sample names (and it's not really necessary since we check how many samples are shraed between each individual pair of traits)
2020-11-18Fixed issue where the cofactor trait descriptions didn't work correctlyzsloan
for genotype/snp cofactors (the code previously only accounted for probeset/phenotype cofactors, so it was treating genotypes/snps like phenotype traits)
2020-11-18Changed default Low/High colors for the correlation scatterplot cofactorzsloan
coloring to Blue/Red respectively (was originally Light Grey/Black)
2020-11-18Added some jquery closing the "Add To Collection" colorbox window afterzsloan
its form is submitted
2020-11-18Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-11-18Fixed issue that was causing scatterplot cofactors to not work if thezsloan
cofactors were genotypes (because it tried to get the "description_display" which doesn't exist for genotype traits)
2020-11-18Removed console.log and commented out statements fromzsloan
get_traits_from_collection.js
2020-11-18Fixed "back_to_collections" function in get_traits_from_collection.jszsloan
(function that lets you return from viewing a collection to viewing the list of collections when selecting cofactors for scatterplot)
2020-11-18Merge pull request #481 from Alexanderlacuna/test-SampleListBonfaceKilz
Test sample list
2020-11-16update refactored natural_sort function in show_trait/SampleList.pyAlexanderlacuna
2020-11-12Import fontawesome css/js and used its info character for glossary links on ↵zsloan
search results page
2020-11-12Substituted -log(p) with -logP as mentioned in Rob's e-mailzsloan
2020-11-12Show Mb positions to 6 decimal places in mapping results tablezsloan
2020-11-11Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan