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-rw-r--r--wqflask/wqflask/marker_regression/rqtl_mapping.py2
1 files changed, 1 insertions, 1 deletions
diff --git a/wqflask/wqflask/marker_regression/rqtl_mapping.py b/wqflask/wqflask/marker_regression/rqtl_mapping.py
index c7a3451a..3bf06ea6 100644
--- a/wqflask/wqflask/marker_regression/rqtl_mapping.py
+++ b/wqflask/wqflask/marker_regression/rqtl_mapping.py
@@ -49,7 +49,7 @@ def run_rqtl(trait_name, vals, samples, dataset, pair_scan, mapping_scale, model
if do_control == "true" and control_marker:
post_data["control"] = control_marker
- if not manhattan_plot:
+ if not manhattan_plot and not pair_scan:
post_data["interval"] = True
if cofactors:
post_data["addcovar"] = True