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Diffstat (limited to 'wqflask')
| -rw-r--r-- | wqflask/wqflask/templates/index_page.html | 39 |
1 files changed, 19 insertions, 20 deletions
diff --git a/wqflask/wqflask/templates/index_page.html b/wqflask/wqflask/templates/index_page.html index dc7e058c..47181a4c 100644 --- a/wqflask/wqflask/templates/index_page.html +++ b/wqflask/wqflask/templates/index_page.html @@ -72,7 +72,7 @@ </div> <!-- USER HELP --> - <!--<p >Databases marked with <b>**</b>--> + <!--<p>Databases marked with <b>**</b>--> <!-- suffix are not public yet.<br>--> <!-- Access requires <a href="/account.html" target=--> <!-- "_blank" class="fs14">user login</a>.</p>--> @@ -140,27 +140,26 @@ chromosome 1 between 25 and 30 Mb.</li> <li><b>MEAN=(15 16) LRS=(23 46)</b> in the <b>Combined</b> field finds - highly expressed genes (15 to 16 log2 units) AND with peak <a href="http://www.genenetwork.org/glossary.html#L" target="_blank">LRS</a> + highly expressed genes (15 to 16 log2 units) AND with peak <a href="http://www.genenetwork.org/glossary.html#L">LRS</a> linkage between 23 and 46.</li> - <li><b>RIF=mitochondrial</b> searches RNA databases for <a href="https://en.wikipedia.org/wiki/GeneRIF" target="_blank"> + <li><b>RIF=mitochondrial</b> searches RNA databases for <a href="https://en.wikipedia.org/wiki/GeneRIF"> GeneRIF</a> links.</li> - <li><b>WIKI=nicotine</b> searches <a href="http://www.genenetwork.org/webqtl/main.py?FormID=geneWiki" target="_blank"> + <li><b>WIKI=nicotine</b> searches <a href="http://www.genenetwork.org/webqtl/main.py?FormID=geneWiki"> GeneWiki</a> for genes that you or other users have annotated with the word <i>nicotine</i>.</li> <li><b>GO:0045202</b> searches for synapse-associated genes listed in the - <a href="http://www.godatabase.org/cgi-bin/amigo/go.cgi" target="_blank"> - Gene Ontology</a>.</li> + <a href="http://amigo.geneontology.org/amigo/medial_search?q=GO%3A0045202">Gene Ontology</a>.</li> <li><b>GO:0045202 LRS=(9 99 Chr4 122 155) cisLRS=(9 999 10)</b> - finds synapse-associated genes with <a href="http://www.genenetwork.org/glossary.html#E" target="_blank"> + finds synapse-associated genes with <a href="http://www.genenetwork.org/glossary.html#E"> cis eQTL</a> on Chr 4 from 122 and 155 Mb with LRS scores between 9 and 999.</li> <li><b>RIF=diabetes LRS=(9 999 Chr2 100 105) transLRS=(9 999 10)</b> - finds diabetes-associated transcripts with peak <a href="http://www.genenetwork.org/glossary.html#E" target="_blank"> + finds diabetes-associated transcripts with peak <a href="http://www.genenetwork.org/glossary.html#E"> trans eQTLs</a> on Chr 2 between 100 and 105 Mb with LRS scores between 9 and 999.</li> </ul> @@ -176,7 +175,7 @@ <h3>Thirty minute tour</h3> <p> Take the 30 minute - GeneNetwork <a href="http://www.genenetwork.org/tutorial/WebQTLTour/" target="_blank" class="fs14">tour</a> that includes screen shots and + GeneNetwork <a href="http://www.genenetwork.org/tutorial/WebQTLTour/" class="fs14">tour</a> that includes screen shots and typical steps in the analysis. </p> @@ -187,8 +186,8 @@ and Database fields above. </p> - <p>The <a href="/conditionsofUse.html" target="_blank">conditions</a> - and <a href="/statusandContact.html" target="_blank">contact + <p>The <a href="/conditionsofUse.html">conditions</a> + and <a href="/statusandContact.html">contact </a> pages have information on the status of data sets and advice on their use and citation.</p> @@ -201,25 +200,25 @@ </div> <h3>Websites affiliated with GeneNetwork</h3> <ul> - <li><a href="http://ucscbrowser.genenetwork.org/" target="_blank">Genome + <li><a href="http://ucscbrowser.genenetwork.org/">Genome browser</a> at UTHSC</li> - <li><a href="http://galaxy.genenetwork.org/" target="_blank">Galaxy</a> at + <li><a href="http://galaxy.genenetwork.org/">Galaxy</a> at UTHSC</li> - <li>GeneNetwork 1 at <a href="http://ec2.genenetwork.org/" target="_blank">Amazon + <li>GeneNetwork 1 at <a href="http://ec2.genenetwork.org/">Amazon Cloud (EC2)</a></li> - <li>GeneNetwork 1 Source Code at <a href="http://sourceforge.net/projects/genenetwork/" target="_blank">SourceForge</a></li> + <li>GeneNetwork 1 Source Code at <a href="http://sourceforge.net/projects/genenetwork/">SourceForge</a></li> - <li>GeneNetwork 2 Source Code at <a href="https://github.com/genenetwork/genenetwork2" target="_blank">GitHub</a></li> + <li>GeneNetwork 2 Source Code at <a href="https://github.com/genenetwork/genenetwork2">GitHub</a></li> </ul> <h3>GN1 Mirror and development sites</h3> <ul> - <li><a href="http://www.genenetwork.org/" target="_blank">Main GN1 site at UTHSC</a> (main site)</li> - <li><a href="http://genenetwork.helmholtz-hzi.de/" target="_blank">Germany at the HZI</a></li> - <li><a href="http://genenetwork.memphis.edu/" target="_blank">Memphis at the U of M</a></li> + <li><a href="http://www.genenetwork.org/">Main GN1 site at UTHSC</a> (main site)</li> + <li><a href="http://genenetwork.helmholtz-hzi.de/">Germany at the HZI</a></li> + <li><a href="http://genenetwork.memphis.edu/">Memphis at the U of M</a></li> </ul> </section> @@ -256,7 +255,7 @@ <h3>User Guide</h3> <h5>Read the - <a href="http://www.genenetwork.org/index4.html" target="_blank"> + <a href="http://www.genenetwork.org/index4.html"> user guide</a>.</h5> </section>--> |