diff options
Diffstat (limited to 'wqflask/wqflask/my_pylmm/pyLMM/runlmm.py')
| -rw-r--r-- | wqflask/wqflask/my_pylmm/pyLMM/runlmm.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py b/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py index 3b0672b4..ab698e41 100644 --- a/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py +++ b/wqflask/wqflask/my_pylmm/pyLMM/runlmm.py @@ -21,7 +21,7 @@ from optparse import OptionParser import sys import tsvreader import numpy as np -from lmm import gn2_load_redis, gn2_iter_redis, calculate_kinship_new +from lmm import gn2_load_redis, gn2_load_redis_iter, calculate_kinship_new from kinship import kinship, kinship_full import genotype import phenotype @@ -107,7 +107,7 @@ if cmd == 'iterator': if options.remove_missing_phenotypes: raise Exception('Can not use --remove-missing-phenotypes with LMM2') snp_iterator = tsvreader.geno_iter(options.geno) - ps, ts = gn2_iter_redis('testrun_iter','other',k,y,snp_iterator) + ps, ts = gn2_load_redis_iter('testrun_iter','other',k,y,snp_iterator) print np.array(ps) print len(ps),sum(ps) # Test results |