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Diffstat (limited to 'wqflask/dataSharing/SharingBody.py')
| -rwxr-xr-x | wqflask/dataSharing/SharingBody.py | 290 |
1 files changed, 290 insertions, 0 deletions
diff --git a/wqflask/dataSharing/SharingBody.py b/wqflask/dataSharing/SharingBody.py new file mode 100755 index 00000000..4445e0d1 --- /dev/null +++ b/wqflask/dataSharing/SharingBody.py @@ -0,0 +1,290 @@ +# Copyright (C) University of Tennessee Health Science Center, Memphis, TN. +# +# This program is free software: you can redistribute it and/or modify it +# under the terms of the GNU Affero General Public License +# as published by the Free Software Foundation, either version 3 of the +# License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. +# See the GNU Affero General Public License for more details. +# +# This program is available from Source Forge: at GeneNetwork Project +# (sourceforge.net/projects/genenetwork/). +# +# Contact Drs. Robert W. Williams and Xiaodong Zhou (2010) +# at rwilliams@uthsc.edu and xzhou15@uthsc.edu +# +# +# +# This module is used by GeneNetwork project (www.genenetwork.org) +# +# Created by GeneNetwork Core Team 2010/08/10 +# +# Last updated by GeneNetwork Core Team 2010/10/20 + +sharing_body_string = """ +<TD vAlign=top width="100%" align="left" height=10 bgColor=#eeeeee> + + <p style="font-size:18px;font-family:verdana;color:black"><B> Data Set Download</B></p> + <Form METHOD="get" ACTION="/webqtl/main.py" name="SEARCHFORM"> + + <TABLE width="800" border="0"> + + <!-- SPECIES SELECTION --> + <TR> + <TD align=right height="35" style="font-size:14px;font-family:verdana;color:black" width="16%"> + <B>Species:</B> + </TD> + <TD width="3%"> + </TD> + <TD NOWRAP width="85%" align="left"> + <DIV Id="menu0"> + <Select NAME="species" size=1 id="species" onchange="fillOptions('species');"> + </Select> + </DIV> + </TD> + </TR> + + <!-- GROUP SELECTION --> + <TR> + <TD align="right" height="35" style="font-size:14px;font-family:verdana;color:black"> + <B>Group:</B> + </TD> + <TD> + </TD> + <TD NOWRAP width="85%" align="left"> + <DIV Id="menu1"> + + <Select NAME="cross" size=1 id="cross" onchange="fillOptions('cross');"> + </Select> + <input type="button" class="button" value=" Info " onCLick="javascript:crossinfo();"> + </DIV> + </TD> + </TR> + + <!-- TYPE SELECTION --> + <TR> + <TD align=right height=35 style="font-size:14px;font-family:verdana;color:black"> + <B>Type:</B> + </TD> + <TD> + </TD> + <TD NOWRAP width="85%" align="left"> + <DIV Id="menu2"> + <Select NAME="tissue" size=1 id="tissue" onchange="fillOptions('tissue');"> + + </Select> + </DIV> + </TD> + </TR> + + <!-- DATABASE SELECTION --> + <TR> + <TD align=right height=35 style="font-size:14px;font-family:verdana;color:black"> + <B>Database:</B> + </TD> + <TD> + </TD> + <TD NOWRAP width="85%" align="left"> + <DIV Id="menu3"> + <Select NAME="database" size=1 id="database"> + </Select> + <input type="button" class="button" value=" Info " onCLick="javascript:databaseinfo();"> + </DIV> + </TD> + </TR> + +<!-- SEARCH, MAKE DEFAULT, ADVANCED SEARCH --> + <TR> + <td></td> + <td></td> + <TD ALIGN="left" HEIGHT="40"> + <INPUT TYPE="button" CLASS="button" STYLE="font-size:12px" VALUE=" Download " onCLick="javascript:datasetinfo();"> + </TD> + </TR> + </TABLE> + + <SCRIPT SRC="/javascript/selectDatasetMenu.js"></SCRIPT> + </FORM> + + <p style="font-size:18px;font-family:verdana;color:black"><B> GeneNetwork Accession Number</B></p> + <form method="get" action="/webqtl/main.py" name="f2" target="_blank"> + <INPUT TYPE="hidden" NAME="FormID" VALUE="sharinginfo"> + <TABLE width="800" border="0"> + <tr> + <td align=right height="35" style="font-size:14px;font-family:verdana;color:black" width="16%"><b>GN:</b></td> + <td width=3%></td> + <td><input type="text" name="GN_AccessionId" size="40" /> E.g. 112</td> + </tr> + <tr> + <td></td> + <td></td> + <td HEIGHT="40"> + <input type="Submit" class="button" STYLE="font-size:12px" VALUE=" Submit "> + </td> + </tr> + </table> + </form> + +</td> +""" + +sharinginfo_body_string = """<td> +<a href="/webqtl/main.py?FormID=sharingListDataset">List of DataSets</a><br> +<H1 class="title" id="parent-fieldname-title">%s +<a href="/webqtl/main.py?FormID=sharinginfoedit&GN_AccessionId=%s"><img src="/images/modify.gif" alt="modify this page" border="0" valign="middle"></a> +<span style="color:red;">%s</span> +</H1> +<table border="0" width="100%%"> +<tr> +<td valign="top" width="50%%"> +<TABLE cellSpacing=0 cellPadding=5 width=100%% border=0> + <TR><td><b>GN Accession:</b> GN%s</TD></tr> + <TR><TD><b>GEO Series:</b> %s</TD></TR> + <TR><TD><b>Title:</b> %s</TD></TR> + <TR><TD><b>Organism:</b> <a href=http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&id=%s>%s</a></TD></tr> + <tr><TD><b>Group:</b> %s</TD></TR> + <TR><TD><b>Tissue:</b> %s</TD></tr> + <tr><TD><b>Dataset Status:</b> %s</TD></tr> + <TR><TD><b>Platforms:</b> %s</TD></TR> + <TR><TD><b>Normalization:</b> %s</TD></TR> + <TR><TD><!--Code below to Show hide Contact information --> + <a href="#" onclick="colapse('answer1')">See Contact Information</a><br> + <span id="answer1" style="display: none; return: false;"> + %s<br> + %s<br> + %s<br> + %s<br> + %s, %s %s %s<br> + Tel. %s<br> + %s<br> + <a href="%s">%s</a> + </span><!--Code above to Show hide Contact information --></TD></TR> +</TABLE> +</td> +<td valign="top" width="50%%"> +<table border="0" width="100%%"> +<tr> + <td bgcolor="#dce4e1"><b>Download datasets and supplementary data files</b></td> +</tr> +<tr> + <td>%s</td> +</tr> +</table> +</td> +</tr> +</table> +<HR> +<p> +<table width="100%%" border="0" cellpadding="5" cellspacing="0"> +<tr><td><span style="font-size:115%%;font-weight:bold;">Summary:</span></td></tr> + <tr><td> %s<br><br></td></tr> +<tr><td><span style="font-size:115%%;font-weight:bold;">About the cases used to generate this set of data:</span></td></tr> + <tr><td> %s<br><br></td></tr> +<tr><td><span style="font-size:115%%;font-weight:bold;">About the tissue used to generate this set of data:</span></td></tr> + <tr><td> %s<br><br></td></tr> +<tr><td><span style="font-size:115%%;font-weight:bold;">About downloading this data set:</span></td></tr> + <tr><td> %s<br><br></td></tr> +<tr><td><span style="font-size:115%%;font-weight:bold;">About the array platform:</span></td></tr> + <tr><td> %s<br><br></td></tr> +<tr><td><span style="font-size:115%%;font-weight:bold;">About data values and data processing:</span></td></tr> + <tr><td> %s<br><br></td></tr> +<tr><td><span style="font-size:115%%;font-weight:bold;">Data source acknowledgment:</span></td></tr> + <tr><td> %s<br><br></td></tr> +<tr><td><span style="font-size:115%%;font-weight:bold;">Experiment Type:</span></td></tr> + <tr><td> %s<br><br></td></tr> +<tr><td><span style="font-size:115%%;font-weight:bold;">Overall Design:</span></td></tr> + <tr><td> %s<br><br></td></tr> +<tr><td><span style="font-size:115%%;font-weight:bold;">Contributor:</span></td></tr> + <tr><td> %s<br><br></td></tr> +<tr><td><span style="font-size:115%%;font-weight:bold;">Citation:</span></td></tr> + <tr><td> %s<br><br></td></tr> +<tr><td><span style="font-size:115%%;font-weight:bold;">Submission Date:</span></td></tr> + <tr><td> %s<br><br></td></tr> +<tr><td><span style="font-size:115%%;font-weight:bold;">Laboratory:</span></td></tr> + <tr><td> %s<br><br></td></tr> +<tr><td><span style="font-size:115%%;font-weight:bold;">Samples:</span></td></tr> + <tr><td> %s<br><br></td></tr> +</table> +</p> +</td> +""" + +sharinginfoedit_body_string = """<td> +<H1 class="title">%s</H1> +<script language="javascript"> +function CheckGNAccesionId(){ + if (document.sharinginfoupdate.GN_AccesionId.value.length == 0){ + alert("Please input GN Accesion Id"); + document.sharinginfoupdate.GN_AccesionId.focus(); + return false; + } else { + return true; + } +} +</script> +<table border="0" CELLSPACING="0" CELLPADDING="8"> +<form name="sharinginfoupdate" method="post" action="/webqtl/main.py?FormID=sharinginfoupdate" onsubmit="return CheckGNAccesionId();"> +<input type="hidden" name="Id" value="%s"> + + <tr><TH COLSPAN=2><h2 class="title">Principal Investigator</h2></TH></tr> + <tr><td align="right" width="100"><b>Contact Name:</b></td><td width="200"><input type='text' name='Contact_Name' size='90' value='%s'></td></tr> + <tr><td align="right"><b>Emails:</b></td><td><input type='text' name='Emails' size='90' value='%s'></td></tr> + <tr><td align="right"><b>Phone:</b></td><td><input type='text' name='Phone' size='90' value='%s'></td></tr> + <tr><td align="right"><b>URL:</b></td><td><input type='text' name='URL' size='90' value='%s'></td></tr> + <tr><td align="right"><b>Organization Name:</b></td><td><input type='text' name='Organization_Name' size='90' value='%s'></td></tr> + <tr><td align="right"><b>Department:</b></td><td><input type='text' name='Department' size='90' value='%s'></td></tr> + <tr><td align="right"><b>Laboratory:</b></td><td><input type='text' name='Laboratory' size='90' value='%s'></td></tr> + <tr><td align="right"><b>Address:</b></td><td><input type='text' name='Street' size='90' value='%s'></td></tr> + <tr><td align="right"><b>City:</b></td><td><input type='text' name='City' size='90' value='%s'></td></tr> + <tr><td align="right"><b>State:</b></td><td><input type='text' name='State' size='90' value='%s'></td></tr> + <tr><td align="right"><b>ZIP:</b></td><td><input type='text' name='ZIP' size='90' value='%s'></td></tr> + <tr><td align="right"><b>Country:</b></td><td><input type='text' name='Country' size='90' value='%s'></td></tr> + + <tr><TH COLSPAN=2><h2 class="title">Summary</h2></TH></tr> + <tr><td align="right"><b>Summary: </b></td><td><TEXTAREA NAME="Summary" cols="77" rows="15">%s</textarea></td></tr> + + <tr><TH COLSPAN=2><h2 class="title">Biology</h2></TH></tr> + <tr><td align="right"><b>Experiment Design:</b></td><td><TEXTAREA NAME="Experiment_Type" cols="77" rows="15">%s</textarea></td></tr> + <tr><td align="right"><b>About the cases used to<br>generate this set of data:</b></td><td><TEXTAREA NAME="About_Cases" cols="77" rows="15">%s</textarea></td></tr> + <tr><td align="right"><b>About the tissue used to<br>generate this set of data:</b></td><td><TEXTAREA NAME="About_Tissue" cols="77" rows="15">%s</textarea></td></tr> + + <tr><TH COLSPAN=2><h2 class="title">Technique</h2></TH></tr> + <tr><td align="right"><b>About downloading this data set:</b></td><td><TEXTAREA NAME="About_Download" cols="77" rows="15">%s</textarea></td></tr> + <tr><td align="right"><b>About the array platform:</b></td><td><TEXTAREA NAME="About_Array_Platform" cols="77" rows="15">%s</textarea></td></tr> + + <tr><TH COLSPAN=2><h2 class="title">Bioinformatics</h2></TH></tr> + <tr><td align="right"><b>About data values and<br>data processing:</b></td><td><TEXTAREA NAME="About_Data_Values_Processing" cols="77" rows="15">%s</textarea></td></tr> + <tr><td align="right"><b>Overall Design:</b></td><td><TEXTAREA NAME="Overall_Design" cols="77" rows="15">%s</textarea></td></tr> + + <tr><TH COLSPAN=2><h2 class="title">Misc</h2></TH></tr> + <tr><td align="right"><b>Contributor:</b></td><td><TEXTAREA NAME="Contributor" cols="77" rows="15">%s</textarea></td></tr> + <tr><td align="right"><b>Citation:</b></td><td><TEXTAREA NAME="Citation" cols="77" rows="5">%s</textarea></td></tr> + <tr><td align="right"><b>Data source acknowledgment:</b></td><td><TEXTAREA NAME="Data_Source_Acknowledge" cols="77" rows="15">%s</textarea></td></tr> + + <tr><TH COLSPAN=2><h2 class="title">Administrator ONLY</h2></TH></tr> + <tr><td align="right"><b>GN Accesion Id:</b></td><td><input type='text' name='GN_AccesionId' size='90' value='%s'></td></tr> + <tr><td align="right"><b>DB Title in GN:</b></td><td><input type='text' name='InfoPageTitle' size='90' value='%s'></td></tr> + <tr><td align="right"><b>GEO Series:</b></td><td><input type='text' name='GEO_Series' size='90' value='%s'></td></tr> + <tr><td align="right"><b>Status:</b></td><td><input type='text' name='Status' size='90' value='%s'></td></tr> + <tr><td align="right"><b>Title:</b></td><td><input type='text' name='Title' size='90' value='%s'></td></tr> + <tr><td align="right"><b>Organism_Id (Taxonomy ID):</b></td><td><input type='text' name='Organism_Id' size='90' value='%s'></td></tr> + <tr><td align="right"><b>Organism:</b></td><td><input type='text' name='Organism' size='90' value='%s'></td></tr> + <tr><td align="right"><b>Submission Date:</b></td><td><input type='text' name='Submission_Date' size='90' value='%s'></td></tr> + <tr><td align="right"><b>Platforms:</b></td><td><input type='text' name='Platforms' size='90' value='%s'></td></tr> + <tr><td align="right"><b>Species:</b></td><td><input type='text' name='Species' size='90' value='%s'></td></tr> + <tr><td align="right"><b>Tissue:</b></td><td><input type='text' name='Tissue' size='90' value='%s'></td></tr> + <tr><td align="right"><b>Normalization:</b></td><td><input type='text' name='Normalization' size='90' value='%s'></td></tr> + <tr><td align="right"><b>Inbred Set:</b></td><td><input type='text' name='InbredSet' size='90' value='%s'></td></tr> + <tr><td align="right"><b>Info Page Name:</b></td><td><input type='text' name='InfoPageName' size='90' value='%s'></td></tr> + <tr><td align="right"><b>Samples:</b></td><td><input type='text' name='Samples' size='90' value='%s'></td></tr> + <tr><td align="right"><b>Authorized Users:</b></td><td><input type='text' name='AuthorizedUsers' size='90' value='%s'></td></tr> + <tr><td align="right"><b>Progress:</b></td><td><input type='text' name='Progress' size='90' value='%s'></td></tr> + + <tr><td> <colspan='2' align="center"><input type="Submit" class="button" style="font-size:12px" value=" Submit "></td></tr> + +</form> +</table> +</td>""" |