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-rwxr-xr-xwqflask/base/data_set.py35
1 files changed, 33 insertions, 2 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py
index 1668940c..f301cc05 100755
--- a/wqflask/base/data_set.py
+++ b/wqflask/base/data_set.py
@@ -167,8 +167,8 @@ class DatasetGroup(object):
self.incparentsf1 = False
self.allsamples = None
-
-
+
+
def get_markers(self):
#print("self.species is:", self.species)
if self.species == "human":
@@ -222,6 +222,37 @@ class DatasetGroup(object):
self.samplelist = list(genotype.prgy)
+class DataSets(object):
+ """Builds a list of DataSets"""
+
+ def __init__(self):
+ self.datasets = list()
+
+ type_dict = {'phenotype': 'PublishFreeze',
+ 'mrna_assay': 'ProbeSetFreeze',
+ 'genotype': 'GenoFreeze'}
+
+ for dataset_type in type_dict:
+ query = "SELECT Name FROM {}".format(type_dict[dataset_type])
+ for result in g.db.execute(query).fetchall():
+ #The query at the beginning of this function isn't necessary here, but still would
+ #rather just reuse it
+ create_dataset(result.Name)
+
+
+ #query = """SELECT Name FROM ProbeSetFreeze
+ # UNION
+ # SELECT Name From PublishFreeze
+ # UNION
+ # SELECT Name From GenoFreeze"""
+ #
+ #for result in g.db.execute(query).fetchall():
+ # dataset = DataSet(result.Name)
+ # self.datasets.append(dataset)
+
+#ds = DataSets()
+#print("[orange] ds:", ds.datasets)
+
class DataSet(object):
"""
DataSet class defines a dataset in webqtl, can be either Microarray,