diff options
Diffstat (limited to 'wqflask/base')
| -rwxr-xr-x | wqflask/base/data_set.py | 17 |
1 files changed, 7 insertions, 10 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index 20c9a24f..beb62bd7 100755 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -436,8 +436,13 @@ class DataSet(object): print("Dataset {} is not yet available in GeneNetwork.".format(self.name)) pass - def get_trait_data(self): - self.samplelist = self.group.samplelist + self.group.parlist + self.group.f1list + def get_trait_data(self, sample_list=None): + if sample_list: + self.samplelist = sample_list + self.group.parlist + self.group.f1list + else: + self.samplelist = self.group.samplelist + self.group.parlist + self.group.f1list + + query = """ SELECT Strain.Name, Strain.Id FROM Strain, Species WHERE Strain.Name IN {} @@ -1085,16 +1090,8 @@ class MrnaAssayDataSet(DataSet): ProbeSetXRef.ProbeSetId=ProbeSet.Id; """ % (column_name, escape(str(self.id))) results = g.db.execute(query).fetchall() - print("in retrieve_genes results {}: {}".format(type(results), results)) return dict(results) - - #return {item[0]: item[1] for item in results} - - #symbol_dict = {} - #for item in results: - # symbol_dict[item[0]] = item[1] - #return symbol_dict #def retrieve_gene_symbols(self): # query = """ |