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-rw-r--r--wqflask/base/trait.py68
1 files changed, 0 insertions, 68 deletions
diff --git a/wqflask/base/trait.py b/wqflask/base/trait.py
index df96d46e..a9223a32 100644
--- a/wqflask/base/trait.py
+++ b/wqflask/base/trait.py
@@ -341,74 +341,6 @@ def jsonable(trait):
return dict()
-def jsonable_table_row(trait, dataset_name, index):
- """Return a list suitable for json and intended to be displayed in a table
-
- Actual turning into json doesn't happen here though"""
-
- dataset = create_dataset(dataset_name)
-
- if dataset.type == "ProbeSet":
- if trait.mean == "":
- mean = "N/A"
- else:
- mean = "%.3f" % round(float(trait.mean), 2)
- if trait.additive == "":
- additive = "N/A"
- else:
- additive = "%.3f" % round(float(trait.additive), 2)
- return ['<input type="checkbox" name="searchResult" class="checkbox trait_checkbox" value="' + hmac.data_hmac('{}:{}'.format(str(trait.name), dataset.name)) + '">',
- index,
- '<a href="/show_trait?trait_id=' +
- str(trait.name)+'&dataset='+dataset.name +
- '">'+str(trait.name)+'</a>',
- trait.symbol,
- trait.description_display,
- trait.location_repr,
- mean,
- trait.LRS_score_repr,
- trait.LRS_location_repr,
- additive]
- elif dataset.type == "Publish":
- if trait.additive == "":
- additive = "N/A"
- else:
- additive = "%.2f" % round(float(trait.additive), 2)
- if trait.pubmed_id:
- return ['<input type="checkbox" name="searchResult" class="checkbox trait_checkbox" value="' + hmac.data_hmac('{}:{}'.format(str(trait.name), dataset.name)) + '">',
- index,
- '<a href="/show_trait?trait_id=' +
- str(trait.name)+'&dataset='+dataset.name +
- '">'+str(trait.name)+'</a>',
- trait.description_display,
- trait.authors,
- '<a href="' + trait.pubmed_link + '">' + trait.pubmed_text + '</href>',
- trait.LRS_score_repr,
- trait.LRS_location_repr,
- additive]
- else:
- return ['<input type="checkbox" name="searchResult" class="checkbox trait_checkbox" value="' + hmac.data_hmac('{}:{}'.format(str(trait.name), dataset.name)) + '">',
- index,
- '<a href="/show_trait?trait_id=' +
- str(trait.name)+'&dataset='+dataset.name +
- '">'+str(trait.name)+'</a>',
- trait.description_display,
- trait.authors,
- trait.pubmed_text,
- trait.LRS_score_repr,
- trait.LRS_location_repr,
- additive]
- elif dataset.type == "Geno":
- return ['<input type="checkbox" name="searchResult" class="checkbox trait_checkbox" value="' + hmac.data_hmac('{}:{}'.format(str(trait.name), dataset.name)) + '">',
- index,
- '<a href="/show_trait?trait_id=' +
- str(trait.name)+'&dataset='+dataset.name +
- '">'+str(trait.name)+'</a>',
- trait.location_repr]
- else:
- return dict()
-
-
def retrieve_trait_info(trait, dataset, get_qtl_info=False):
assert dataset, "Dataset doesn't exist"