1 files changed, 0 insertions, 59 deletions
diff --git a/wqflask/base/species.py b/wqflask/base/species.py
deleted file mode 100644
index 0844fada..00000000
--- a/wqflask/base/species.py
+++ /dev/null
@@ -1,59 +0,0 @@
-from dataclasses import dataclass
-from typing import Optional, Union
-from collections import OrderedDict
-
-
-class TheSpecies:
-    """Data related to species."""
-
-    def __init__(self, dataset=None, species_name=None) -> None:
-        "Initialise the Species object"
-        self.dataset = dataset
-        self.name = self.species_name = species_name
-        self.chromosomes = Chromosomes(species=species_name,
-                                       dataset=dataset)
-
-
-@dataclass
-class IndChromosome:
-    """Data related to IndChromosome"""
-    name: str
-    length: int
-
-    @property
-    def mb_length(self) -> Union[int, float]:
-        """Chromosome length in mega-bases"""
-        return self.length / 1000000
-
-
-@dataclass
-class Chromosomes:
-    """Data related to a chromosome"""
-
-    def __init__(self, dataset, species: Optional[str]) -> None:
-        "initialise the Chromosome object"
-        self.species = species
-        if species is None:
-            self.dataset = dataset
-
-    def chromosomes(self, db_cursor) -> OrderedDict:
-        """Lazily fetch the chromosomes"""
-        chromosomes = OrderedDict()
-        if self.species is not None:
-            db_cursor.execute(
-                "SELECT Chr_Length.Name, Chr_Length.OrderId, Length "
-                "FROM Chr_Length, Species WHERE "
-                "Chr_Length.SpeciesId = Species.SpeciesId AND "
-                "Species.Name = %s "
-                "ORDER BY OrderId", (self.species.capitalize(),))
-        else:
-            db_cursor.execute(
-                "SELECT Chr_Length.Name, Chr_Length.OrderId, "
-                "Length FROM Chr_Length, InbredSet WHERE "
-                "Chr_Length.SpeciesId = InbredSet.SpeciesId AND "
-                "InbredSet.Name = "
-                "%s ORDER BY OrderId", (self.dataset.group.name,))
-        for name, _, length in db_cursor.fetchall():
-            chromosomes[name] = IndChromosome(
-                name=name, length=length)
-        return chromosomes