diff options
Diffstat (limited to 'wqflask/base/data_set.py')
-rwxr-xr-x | wqflask/base/data_set.py | 14 |
1 files changed, 13 insertions, 1 deletions
diff --git a/wqflask/base/data_set.py b/wqflask/base/data_set.py index 96e04df0..5d21c901 100755 --- a/wqflask/base/data_set.py +++ b/wqflask/base/data_set.py @@ -1055,7 +1055,6 @@ class MrnaAssayDataSet(DataSet): """ % (escape(self.name), escape(self.dataset.name)) results = g.db.execute(query).fetchone() return results[0] - def retrieve_sample_data(self, trait): query = """ @@ -1077,6 +1076,19 @@ class MrnaAssayDataSet(DataSet): results = g.db.execute(query).fetchall() return results + def retrieve_gene_symbols(self): + query = """ + select ProbeSet.Name, ProbeSet.Symbol + from ProbeSet,ProbeSetXRef + where ProbeSetXRef.ProbeSetFreezeId = %s and + ProbeSetXRef.ProbeSetId=ProbeSet.Id; + """ % (self.id) + results = g.db.execute(query).fetchall() + symbol_dict = {} + for item in results: + symbol_dict[item[0]] = item[1] + return symbol_dict + class TempDataSet(DataSet): '''Temporary user-generated data set''' |